Sequence filename : /auto/dufayard/res/simu_2.4.5/data76.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9875096 . Log(lk) : * -> -7457.135875 . Log(lk) : -7457.135875 -> -7441.075438 1 swap done . Log(lk) : -7441.075438 -> -7439.062099 0 swap done . Log(lk) : -7439.062099 -> -7438.581268 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7416.283453 -> -7415.987683 0 swap done . Log(lk) : -7415.987683 -> -7415.928829 0 swap done . Log(lk) : -7415.928829 -> -7415.909552 0 swap done . Log(lk) : -7415.909552 -> -7415.902031 0 swap done . Last optimization step... . Log(lk) : * -> -7415.897443 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7415.897443 -> -7415.858689 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7415.858689 -> -7415.858337 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7415.858337 -> -7415.858292 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7415.858292 -> -7415.858285 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7415.858285 -> -7415.858283 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7415.858283 -> -7415.858283 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -7415.858283 . Time used 0h0m16s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 12.42user 0.00system 0:15.53elapsed 79%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps