Sequence filename : /auto/dufayard/res/simu_2.4.5/data77.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 9243696 . Log(lk) : * -> -6861.339842 . Log(lk) : -6861.339842 -> -6812.057276 3 swaps done . Log(lk) : -6812.057276 -> -6805.591711 1 swap done . Log(lk) : -6805.591711 -> -6803.946625 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6776.834097 -> -6775.495686 0 swap done . Log(lk) : -6775.495686 -> -6775.313203 0 swap done . Log(lk) : -6775.313203 -> -6775.244613 0 swap done . Log(lk) : -6775.244613 -> -6775.212508 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6775.041166 -> -6775.017047 0 swap done . Log(lk) : -6775.017047 -> -6775.005683 0 swap done . Last optimization step... . Log(lk) : * -> -6774.995888 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.995888 -> -6774.989131 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.989131 -> -6774.987069 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.987069 -> -6774.986268 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.986268 -> -6774.985986 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.985986 -> -6774.985870 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.985870 -> -6774.985828 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.985828 -> -6774.985810 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.985810 -> -6774.985804 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.985804 -> -6774.985801 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -6774.985801 -> -6774.985800 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -6774.985800 . Time used 0h0m18s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 16.22user 0.00system 0:18.09elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps