Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data78.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 10557008

. Log(lk) :               * ->    -8429.509732 
. Log(lk) :    -8429.509732 ->    -8410.896166   2 swaps done 
. Log(lk) :    -8410.896166 ->    -8407.915156   1 swap  done
. Log(lk) :    -8407.915156 ->    -8407.163126   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.941679 ->    -8387.429777   0 swap  done
. Log(lk) :    -8387.429777 ->    -8387.311419   0 swap  done
. Log(lk) :    -8387.311419 ->    -8387.264972   0 swap  done
. Log(lk) :    -8387.264972 ->    -8387.238246   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.211502 ->    -8387.132743   0 swap  done
. Log(lk) :    -8387.132743 ->    -8387.121006   0 swap  done
. Log(lk) :    -8387.121006 ->    -8387.117289   0 swap  done
. Log(lk) :    -8387.117289 ->    -8387.115716   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.115613 ->    -8387.114875   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -8387.114379 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.114379 ->    -8387.114253 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.114253 ->    -8387.114228 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.114228 ->    -8387.114222 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.114222 ->    -8387.114221 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8387.114221 ->    -8387.114221 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -8387.114221 


. Time used 0h0m20s

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18.29user 0.00system 0:19.96elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps