Sequence filename : /auto/dufayard/res/simu_2.4.5/data8.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10582264 . Log(lk) : * -> -9030.216525 . Log(lk) : -9030.216525 -> -8950.464701 3 swaps done . Log(lk) : -8950.464701 -> -8935.042644 2 swaps done . Log(lk) : -8935.042644 -> -8931.560412 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8881.529177 -> -8877.753466 0 swap done . Log(lk) : -8877.753466 -> -8877.218064 0 swap done . Log(lk) : -8877.218064 -> -8876.981482 0 swap done . Log(lk) : -8876.981482 -> -8876.847036 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.442537 -> -8876.340772 0 swap done . Last optimization step... . Log(lk) : * -> -8876.249538 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.249538 -> -8876.187455 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.187455 -> -8876.160521 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.160521 -> -8876.147417 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.147417 -> -8876.141044 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.141044 -> -8876.137862 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.137862 -> -8876.136280 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.136280 -> -8876.135489 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.135489 -> -8876.135093 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.135093 -> -8876.134895 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134895 -> -8876.134795 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134795 -> -8876.134745 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134745 -> -8876.134720 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134720 -> -8876.134707 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134707 -> -8876.134701 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134701 -> -8876.134698 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134698 -> -8876.134696 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8876.134696 -> -8876.134695 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8876.134695 . Time used 0h0m23s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 21.40user 0.00system 0:23.13elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps