Sequence filename : /auto/dufayard/res/simu_2.4.5/data80.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10329704 . Log(lk) : * -> -9460.896602 . Log(lk) : -9460.896602 -> -9415.008013 3 swaps done . Log(lk) : -9415.008013 -> -9409.203007 1 swap done . Log(lk) : -9409.203007 -> -9408.223738 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9350.528794 -> -9348.968108 0 swap done . Log(lk) : -9348.968108 -> -9348.739025 0 swap done . Log(lk) : -9348.739025 -> -9348.658313 0 swap done . Log(lk) : -9348.658313 -> -9348.621995 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.504574 -> -9348.483515 0 swap done . Last optimization step... . Log(lk) : * -> -9348.469737 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.469737 -> -9348.465810 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.465810 -> -9348.464705 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464705 -> -9348.464378 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464378 -> -9348.464273 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464273 -> -9348.464241 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464241 -> -9348.464230 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464230 -> -9348.464227 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464227 -> -9348.464226 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9348.464226 -> -9348.464226 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9348.464226 . Time used 0h0m18s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 15.88user 0.00system 0:18.35elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps