Sequence filename : /auto/dufayard/res/simu_2.4.5/data81.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 8132432 . Log(lk) : * -> -5126.640494 . Log(lk) : -5126.640494 -> -5113.331552 6 swaps done . Log(lk) : -5113.331552 -> -5112.163287 1 swap done . Log(lk) : -5112.163287 -> -5111.970079 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5097.571060 -> -5097.333847 0 swap done . Log(lk) : -5097.333847 -> -5097.319028 0 swap done . Log(lk) : -5097.319028 -> -5097.317006 0 swap done . Log(lk) : -5097.317006 -> -5097.316631 0 swap done . Last optimization step... . Log(lk) : * -> -5097.316514 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5097.316514 -> -5097.255947 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5097.255947 -> -5097.255473 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5097.255473 -> -5097.255458 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5097.255458 -> -5097.255457 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5097.255457 -> -5097.255457 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -5097.255457 . Time used 0h0m14s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 9.89user 0.00system 0:14.02elapsed 70%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps