Sequence filename : /auto/dufayard/res/simu_2.4.5/data82.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 7677824 . Log(lk) : * -> -4824.123497 . Log(lk) : -4824.123497 -> -4812.116936 3 swaps done . Log(lk) : -4812.116936 -> -4809.918245 2 swaps done . Log(lk) : -4809.918245 -> -4809.600700 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4793.148407 -> -4792.977265 0 swap done . Log(lk) : -4792.977265 -> -4792.956098 0 swap done . Log(lk) : -4792.956098 -> -4792.951001 0 swap done . Log(lk) : -4792.951001 -> -4792.949365 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4792.875311 -> -4792.873877 0 swap done . Last optimization step... . Log(lk) : * -> -4792.873301 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4792.873301 -> -4792.873159 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4792.873159 -> -4792.873143 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4792.873143 -> -4792.873142 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4792.873142 -> -4792.873141 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -4792.873141 . Time used 0h0m12s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 10.03user 0.00system 0:11.92elapsed 84%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps