Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data83.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9849840

. Log(lk) :               * ->    -7586.742463 
. Log(lk) :    -7586.742463 ->    -7557.467150   4 swaps done 
. Log(lk) :    -7557.467150 ->    -7551.608106   3 swaps done 
. Log(lk) :    -7551.608106 ->    -7549.027111   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7516.191752 ->    -7515.051010   2 swaps done 
. Log(lk) :    -7515.051010 ->    -7514.744709   0 swap  done
. Log(lk) :    -7514.744709 ->    -7514.684943   0 swap  done
. Log(lk) :    -7514.684943 ->    -7514.665335   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.552352 ->    -7514.542366   0 swap  done
. Log(lk) :    -7514.542366 ->    -7514.538163   0 swap  done
. Log(lk) :    -7514.538163 ->    -7514.536262   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7514.534977 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.534977 ->    -7514.534448 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.534448 ->    -7514.534362 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.534362 ->    -7514.534343 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.534343 ->    -7514.534338 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.534338 ->    -7514.534336 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7514.534336 ->    -7514.534336 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7514.534333 


. Time used 0h0m19s

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15.81user 0.00system 0:19.23elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps