Sequence filename : /auto/dufayard/res/simu_2.4.5/data84.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 4066216 . Log(lk) : * -> -2309.398912 . Log(lk) : -2309.398912 -> -2305.037277 3 swaps done . Log(lk) : -2305.037277 -> -2302.372045 2 swaps done . Log(lk) : -2302.372045 -> -2302.080963 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2298.568977 -> -2298.512333 1 swap done . Log(lk) : -2298.512333 -> -2298.499701 0 swap done . Log(lk) : -2298.499701 -> -2298.496806 0 swap done . Log(lk) : -2298.496806 -> -2298.496132 0 swap done . Last optimization step... . Log(lk) : * -> -2298.495920 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2298.495920 -> -2298.492629 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2298.492629 -> -2298.492624 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -2298.492624 -> -2298.492624 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -2298.492624 . Time used 0h0m4s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 4.66user 0.00system 0:04.78elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps