Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data85.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 11617760

. Log(lk) :               * ->   -12096.850156 
. Log(lk) :   -12096.850156 ->   -12028.309407   3 swaps done 
. Log(lk) :   -12028.309407 ->   -12018.769361   1 swap  done
. Log(lk) :   -12018.769361 ->   -12016.564833   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11969.355360 ->   -11967.587257   1 swap  done
. Log(lk) :   -11967.587257 ->   -11967.230395   1 swap  done
. Log(lk) :   -11967.230395 ->   -11967.086468   1 swap  done
. Log(lk) :   -11967.086468 ->   -11967.002356   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.914100 ->   -11966.866437   0 swap  done
. Log(lk) :   -11966.866437 ->   -11966.845091   0 swap  done
. Log(lk) :   -11966.845091 ->   -11966.833735   0 swap  done
. Log(lk) :   -11966.833735 ->   -11966.827533   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.827274 ->   -11966.823763   0 swap  done
. Log(lk) :   -11966.823763 ->   -11966.821820   0 swap  done

. Last optimization step...

. Log(lk) :               * ->   -11966.820209 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.820209 ->   -11966.819558 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.819558 ->   -11966.819388 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.819388 ->   -11966.819336 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.819336 ->   -11966.819322 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.819322 ->   -11966.819318 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.819318 ->   -11966.819317 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :   -11966.819317 ->   -11966.819316 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -11966.819316 


. Time used 0h0m23s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

22.07user 0.00system 0:23.49elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps