Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data86.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9950864

. Log(lk) :               * ->    -7656.258782 
. Log(lk) :    -7656.258782 ->    -7625.379840   3 swaps done 
. Log(lk) :    -7625.379840 ->    -7620.408719   2 swaps done 
. Log(lk) :    -7620.408719 ->    -7619.186787   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7596.240806 ->    -7595.914684   1 swap  done
. Log(lk) :    -7595.914684 ->    -7595.871413   1 swap  done
. Log(lk) :    -7595.871413 ->    -7595.720784   1 swap  done
. Log(lk) :    -7595.720784 ->    -7595.839854   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7595.720784 ->    -7595.321512   1 swap  done
. Log(lk) :    -7595.321512 ->    -7595.216861   0 swap  done
. Log(lk) :    -7595.216861 ->    -7595.205028   0 swap  done
. Log(lk) :    -7595.205028 ->    -7595.201310   0 swap  done
. Log(lk) :    -7595.201310 ->    -7595.199701   0 swap  done
. Log(lk) :    -7595.199701 ->    -7595.198949   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7595.198422 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7595.198422 ->    -7595.197478 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7595.197478 ->    -7595.197412 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7595.197412 ->    -7595.197396 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7595.197396 ->    -7595.197392 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7595.197392 ->    -7595.197392 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7595.197392 


. Time used 0h0m20s

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17.27user 0.00system 0:20.05elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps