Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data87.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 9799328

. Log(lk) :               * ->    -7985.882434 
. Log(lk) :    -7985.882434 ->    -7951.021881   3 swaps done 
. Log(lk) :    -7951.021881 ->    -7945.987594   1 swap  done
. Log(lk) :    -7945.987594 ->    -7944.954449   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7898.694988 ->    -7897.182689   0 swap  done
. Log(lk) :    -7897.182689 ->    -7896.849940   0 swap  done
. Log(lk) :    -7896.849940 ->    -7896.715289   0 swap  done
. Log(lk) :    -7896.715289 ->    -7896.653361   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.599027 ->    -7896.567833   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -7896.545885 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.545885 ->    -7896.540090 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.540090 ->    -7896.538781 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.538781 ->    -7896.538464 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.538464 ->    -7896.538395 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.538395 ->    -7896.538379 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.538379 ->    -7896.538376 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -7896.538376 ->    -7896.538376 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -7896.538376 


. Time used 0h0m21s

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14.41user 0.00system 0:21.86elapsed 65%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps