Sequence filename : /auto/dufayard/res/simu_2.4.5/data88.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10127656 . Log(lk) : * -> -7978.642642 . Log(lk) : -7978.642642 -> -7959.941175 2 swaps done . Log(lk) : -7959.941175 -> -7957.573333 0 swap done . Log(lk) : -7957.573333 -> -7957.073277 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7936.643323 -> -7936.346096 0 swap done . Log(lk) : -7936.346096 -> -7936.287846 0 swap done . Log(lk) : -7936.287846 -> -7936.268194 0 swap done . Log(lk) : -7936.268194 -> -7936.260277 0 swap done . Last optimization step... . Log(lk) : * -> -7936.255349 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7936.255349 -> -7936.232947 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7936.232947 -> -7936.232620 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7936.232620 -> -7936.232598 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7936.232598 -> -7936.232589 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7936.232589 -> -7936.232589 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -7936.232588 . Time used 0h0m13s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 11.70user 0.00system 0:13.38elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps