Sequence filename : /auto/dufayard/res/simu_2.4.5/data9.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 7980896 . Log(lk) : * -> -5202.944012 . Log(lk) : -5202.944012 -> -5178.440153 3 swaps done . Log(lk) : -5178.440153 -> -5175.705402 1 swap done . Log(lk) : -5175.705402 -> -5175.372100 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5155.657416 -> -5155.446589 0 swap done . Log(lk) : -5155.446589 -> -5155.421565 0 swap done . Log(lk) : -5155.421565 -> -5155.415163 0 swap done . Log(lk) : -5155.415163 -> -5155.413117 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5155.404421 -> -5155.403596 0 swap done . Last optimization step... . Log(lk) : * -> -5155.403212 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5155.403212 -> -5155.403128 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5155.403128 -> -5155.403121 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -5155.403121 -> -5155.403121 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -5155.403121 . Time used 0h0m12s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 9.74user 0.00system 0:11.77elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps