Sequence filename : /auto/dufayard/res/simu_2.4.5/data90.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10077144 . Log(lk) : * -> -7836.162925 . Log(lk) : -7836.162925 -> -7792.641775 5 swaps done . Log(lk) : -7792.641775 -> -7781.934231 3 swaps done . Log(lk) : -7781.934231 -> -7776.070387 3 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7746.171593 -> -7743.790764 1 swap done . Log(lk) : -7743.790764 -> -7743.573236 0 swap done . Log(lk) : -7743.573236 -> -7743.514574 0 swap done . Log(lk) : -7743.514574 -> -7743.494634 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7743.477634 -> -7743.469843 0 swap done . Log(lk) : -7743.469843 -> -7743.466584 0 swap done . Log(lk) : -7743.466584 -> -7743.465099 0 swap done . Last optimization step... . Log(lk) : * -> -7743.464039 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7743.464039 -> -7743.463706 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7743.463706 -> -7743.463631 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7743.463631 -> -7743.463617 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7743.463617 -> -7743.463614 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -7743.463614 -> -7743.463614 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -7743.463614 . Time used 0h0m16s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 14.73user 0.00system 0:16.16elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps