Sequence filename : /auto/dufayard/res/simu_2.4.5/data91.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 11011616 . Log(lk) : * -> -10009.321754 . Log(lk) : -10009.321754 -> -9937.058269 3 swaps done . Log(lk) : -9937.058269 -> -9918.680834 2 swaps done . Log(lk) : -9918.680834 -> -9912.235237 1 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9864.167444 -> -9856.611924 1 swap done . Log(lk) : -9856.611924 -> -9851.484167 1 swap done . Log(lk) : -9851.484167 -> -9849.976705 0 swap done . Log(lk) : -9849.976705 -> -9849.362922 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9848.901142 -> -9848.525180 0 swap done . Log(lk) : -9848.525180 -> -9848.325810 0 swap done . Log(lk) : -9848.325810 -> -9848.207357 0 swap done . Log(lk) : -9848.207357 -> -9848.134823 0 swap done . Last optimization step... . Log(lk) : * -> -9848.067058 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9848.067058 -> -9848.019301 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9848.019301 -> -9848.002710 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9848.002710 -> -9847.995643 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.995643 -> -9847.992569 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.992569 -> -9847.991101 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.991101 -> -9847.990404 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.990404 -> -9847.990044 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.990044 -> -9847.989857 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989857 -> -9847.989752 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989752 -> -9847.989693 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989693 -> -9847.989658 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989658 -> -9847.989637 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989637 -> -9847.989625 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989625 -> -9847.989617 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989617 -> -9847.989612 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989612 -> -9847.989609 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989609 -> -9847.989607 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989607 -> -9847.989606 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9847.989606 -> -9847.989605 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9847.989605 . Time used 0h0m30s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 26.67user 0.00system 0:30.10elapsed 88%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps