Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data93.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 10152912

. Log(lk) :               * ->    -8512.324104 
. Log(lk) :    -8512.324104 ->    -8469.858371   1 swap  done
. Log(lk) :    -8469.858371 ->    -8463.779968   0 swap  done
. Log(lk) :    -8463.779968 ->    -8462.320622   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8420.297445 ->    -8418.993739   0 swap  done
. Log(lk) :    -8418.993739 ->    -8418.694034   0 swap  done
. Log(lk) :    -8418.694034 ->    -8418.585998   1 swap  done
. Log(lk) :    -8418.585998 ->    -8418.550456   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.500707 ->    -8418.484339   0 swap  done
. Log(lk) :    -8418.484339 ->    -8418.476606   0 swap  done
. Log(lk) :    -8418.476606 ->    -8418.472812   0 swap  done
. Log(lk) :    -8418.472812 ->    -8418.470924   0 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.470702 ->    -8418.469682   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -8418.468908 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.468908 ->    -8418.468674 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.468674 ->    -8418.468626 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.468626 ->    -8418.468615 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.468615 ->    -8418.468613 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -8418.468613 ->    -8418.468613 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -8418.468613 


. Time used 0h0m20s

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17.32user 0.00system 0:20.07elapsed 86%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps