Sequence filename : 				 /auto/dufayard/res/simu_2.4.5/data96.phy
Data type :             			 dna
Sequence format : 				 interleaved
Number of data sets : 				 1
Nb of bootstrapped data sets : 			 0
Model name : 					 GTR
Proportion of invariable sites :		 0.000000
Number of subst. rate categs : 			 4
Gamma distribution parameter : 			 estimated
Starting tree : 				 BIONJ
Optimise tree topology : 			 yes
Optimise branch lengths and rate parameters : 	 yes

. Compressing sequences...

. Computing pairwise distances...

. Building BIONJ tree...

. Nbytes = 11036872

. Log(lk) :               * ->    -9400.075458 
. Log(lk) :    -9400.075458 ->    -9349.177304   3 swaps done 
. Log(lk) :    -9349.177304 ->    -9338.173555   2 swaps done 
. Log(lk) :    -9338.173555 ->    -9335.853252   1 swap  done

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9310.380740 ->    -9308.082488   1 swap  done
. Log(lk) :    -9308.082488 ->    -9307.797698   1 swap  done
. Log(lk) :    -9307.797698 ->    -9307.285216   1 swap  done
. Log(lk) :    -9307.285216 ->    -9307.440873   1 swap  done

. Moving backward (topology + branch lengths) 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9307.285216 ->    -9306.850876   1 swap  done
. Log(lk) :    -9306.850876 ->    -9306.596684   0 swap  done
. Log(lk) :    -9306.596684 ->    -9306.524894   0 swap  done
. Log(lk) :    -9306.524894 ->    -9306.487874   0 swap  done
. Log(lk) :    -9306.487874 ->    -9306.466895   0 swap  done
. Log(lk) :    -9306.466895 ->    -9306.454678   0 swap  done
. Log(lk) :    -9306.454678 ->    -9306.447444   0 swap  done

. Last optimization step...

. Log(lk) :               * ->    -9306.440894 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9306.440894 ->    -9306.436440 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9306.436440 ->    -9306.435390 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9306.435390 ->    -9306.435058 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9306.435058 ->    -9306.434957 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9306.434957 ->    -9306.434945 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Log(lk) :    -9306.434945 ->    -9306.434944 

. Optimisation of the GTR parameters...

. Optimisation of the gamma shape parameter...

. Final Log(lk) : -9306.434944 


. Time used 0h0m23s

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

19.50user 0.00system 0:22.17elapsed 87%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps