Sequence filename : /auto/dufayard/res/simu_2.4.5/data97.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 6793864 . Log(lk) : * -> -4121.822149 . Log(lk) : -4121.822149 -> -4116.010448 1 swap done . Log(lk) : -4116.010448 -> -4115.399727 0 swap done . Log(lk) : -4115.399727 -> -4115.291545 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4104.226978 -> -4104.170598 0 swap done . Log(lk) : -4104.170598 -> -4104.162530 0 swap done . Log(lk) : -4104.162530 -> -4104.161050 0 swap done . Log(lk) : -4104.161050 -> -4104.160759 0 swap done . Last optimization step... . Log(lk) : * -> -4104.160672 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4104.160672 -> -4104.156593 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4104.156593 -> -4104.156585 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -4104.156585 -> -4104.156585 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -4104.156585 . Time used 0h0m8s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 7.38user 0.00system 0:07.86elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps