Sequence filename : /auto/dufayard/res/simu_2.4.5/data98.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10784312 . Log(lk) : * -> -8783.394042 . Log(lk) : -8783.394042 -> -8727.493033 3 swaps done . Log(lk) : -8727.493033 -> -8715.086896 0 swap done . Log(lk) : -8715.086896 -> -8712.771689 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8692.697657 -> -8691.216723 0 swap done . Log(lk) : -8691.216723 -> -8690.904475 0 swap done . Log(lk) : -8690.904475 -> -8690.783298 0 swap done . Log(lk) : -8690.783298 -> -8690.723470 0 swap done . Last optimization step... . Log(lk) : * -> -8690.674637 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.674637 -> -8690.605954 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.605954 -> -8690.597862 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.597862 -> -8690.595036 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.595036 -> -8690.594196 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.594196 -> -8690.593891 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.593891 -> -8690.593796 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.593796 -> -8690.593760 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.593760 -> -8690.593749 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.593749 -> -8690.593744 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.593744 -> -8690.593743 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -8690.593743 -> -8690.593742 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Final Log(lk) : -8690.593742 . Time used 0h0m19s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 16.40user 0.00system 0:19.15elapsed 85%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps