Sequence filename : /auto/dufayard/res/simu_2.4.5/data99.phy Data type : dna Sequence format : interleaved Number of data sets : 1 Nb of bootstrapped data sets : 0 Model name : GTR Proportion of invariable sites : 0.000000 Number of subst. rate categs : 4 Gamma distribution parameter : estimated Starting tree : BIONJ Optimise tree topology : yes Optimise branch lengths and rate parameters : yes . Compressing sequences... . Computing pairwise distances... . Building BIONJ tree... . Nbytes = 10986360 . Log(lk) : * -> -9383.672691 . Log(lk) : -9383.672691 -> -9328.477456 3 swaps done . Log(lk) : -9328.477456 -> -9318.437239 3 swaps done . Log(lk) : -9318.437239 -> -9315.916676 2 swaps done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9273.544097 -> -9271.360450 1 swap done . Log(lk) : -9271.360450 -> -9270.704312 0 swap done . Log(lk) : -9270.704312 -> -9270.403313 0 swap done . Log(lk) : -9270.403313 -> -9270.250655 0 swap done . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9270.125610 -> -9270.037182 0 swap done . Log(lk) : -9270.037182 -> -9269.990427 0 swap done . Log(lk) : -9269.990427 -> -9269.965059 0 swap done . Last optimization step... . Log(lk) : * -> -9269.943408 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.943408 -> -9269.935456 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.935456 -> -9269.933470 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.933470 -> -9269.932934 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.932934 -> -9269.932812 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.932812 -> -9269.932782 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.932782 -> -9269.932776 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.932776 -> -9269.932774 . Optimisation of the GTR parameters... . Optimisation of the gamma shape parameter... . Log(lk) : -9269.932774 -> -9269.932774 . Optimisation of the GTR parameters... . WARNING : BFGS failed ! . Optimising one-by-one... . Optimisation of the gamma shape parameter... . Final Log(lk) : -9269.932774 . Time used 0h0m24s %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% 20.22user 0.00system 0:24.59elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps