.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data11.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 459 patterns found. (out of a total of 500 sites) . 37 sites without polymorphism (7.40%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-10696.571610 . ( 1 sec) [ -10694.6353] [GTR parameters ] . ( 1 sec) [ -10693.9844] [Alpha ][ 1.087154] . ( 1 sec) [ -10693.9844] [Topology ] . ( 2 sec) [ -10617.6895] [Topology ] . ( 3 sec) [ -10603.4090] [Topology ] . ( 4 sec) [ -10598.1320] [Topology ] . ( 5 sec) [ -10595.6592] [Topology ] . ( 6 sec) [ -10594.3258] [Topology ] . ( 6 sec) [ -10593.6099] [Topology ] . ( 7 sec) [ -10593.2291] [Topology ] . ( 8 sec) [ -10593.0135] [Topology ] . ( 9 sec) [ -10592.8883] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-10592.814399 . ( 17 sec) [ -10592.7141] [GTR parameters ] . ( 17 sec) [ -10592.6699] [Alpha ][ 1.066035] . ( 17 sec) [ -10592.6699] [Topology ] . ( 18 sec) [ -10592.6165] [Topology ] . ( 18 sec) [ -10592.5856] [Topology ] . ( 19 sec) [ -10592.5669] [Topology ] . ( 20 sec) [ -10592.5554] [Topology ] . ( 21 sec) [ -10592.5483] [Topology ] . ( 22 sec) [ -10592.5439] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-10592.543867 . ( 28 sec) [ -10592.5435] [GTR parameters ] . ( 29 sec) [ -10592.5422] [Alpha ][ 1.062217] . ( 29 sec) [ -10592.5422] [Topology ] . ( 29 sec) [ -10592.5391] [Topology ] . ( 30 sec) [ -10592.5372] [Topology ] . ( 31 sec) [ -10592.5360] [Topology ] . ( 32 sec) [ -10592.5353] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-10592.535251 . ( 39 sec) [ -10592.5352] [GTR parameters ] . ( 39 sec) [ -10592.5352] [Alpha ][ 1.062217] . ( 39 sec) [ -10592.5352] [Topology ] . ( 40 sec) [ -10592.5347] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -10592.534732. . Printing the most likely tree in file 'data11.phy_phyml_tree.txt'... . Time used 0h0m56s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo