.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data30.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 449 patterns found. (out of a total of 500 sites) . 52 sites without polymorphism (10.40%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-11119.090036 . ( 1 sec) [ -11116.2486] [GTR parameters ] . ( 2 sec) [ -11116.2215] [Alpha ][ 0.984187] . ( 2 sec) [ -11116.2215] [Topology ] . ( 3 sec) [ -11048.5706] [Topology ] . ( 4 sec) [ -11038.8163] [Topology ] . ( 5 sec) [ -11036.5652] [Topology ] . ( 6 sec) [ -11035.6337] [Topology ] . ( 7 sec) [ -11035.1848] [Topology ] . ( 8 sec) [ -11034.9511] [Topology ] . ( 9 sec) [ -11034.8247] [Topology ] . ( 10 sec) [ -11034.7550] [Topology ] . Checking for NNIs, optimizing five branches... . ( 19 sec) [ -11034.5574] [Topology ] . Before opt ts/t=1.000000 LK=-11034.557431 . ( 19 sec) [ -11034.4919] [GTR parameters ] . ( 20 sec) [ -11034.4580] [Alpha ][ 1.001854] . ( 20 sec) [ -11034.4580] [Topology ] . ( 21 sec) [ -11034.4100] [Topology ] . ( 22 sec) [ -11034.3880] [Topology ] . ( 23 sec) [ -11034.3763] [Topology ] . ( 24 sec) [ -11034.3700] [Topology ] . ( 25 sec) [ -11034.3664] [Topology ] . ( 26 sec) [ -11034.3645] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-11034.364482 . ( 35 sec) [ -11034.3644] [GTR parameters ] . ( 35 sec) [ -11034.3636] [Alpha ][ 1.004582] . ( 36 sec) [ -11034.3636] [Topology ] . ( 37 sec) [ -11034.3623] [Topology ] . ( 38 sec) [ -11034.3616] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-11034.361630 . ( 47 sec) [ -11034.3616] [GTR parameters ] . ( 47 sec) [ -11034.3616] [Alpha ][ 1.004582] . ( 47 sec) [ -11034.3616] [Topology ] . ( 49 sec) [ -11034.3612] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11034.361242. . Printing the most likely tree in file 'data30.phy_phyml_tree.txt'... . Time used 0h1m10s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo