..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 data60.phy
                . Data type :             			 dna
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 GTR
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Nucleotide equilibrium frequencies : 		 empirical
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 NNIs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

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. Compressing sequences...

. 433 patterns found. (out of a total of 500 sites) 

. 62 sites without polymorphism (12.40%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 9Mo of memory space.

. Maximizing likelihood (using NNI moves)...

. Before opt ts/t=1.000000 LK=-10281.311378
. (    1 sec) [    -10277.3620] [GTR parameters     ]
. (    1 sec) [    -10274.9238] [Alpha              ][  0.855959]
. (    1 sec) [    -10274.9238] [Topology           ]
. (    2 sec) [    -10222.0737] [Topology           ]
. (    4 sec) [    -10212.7676] [Topology           ]
. (    5 sec) [    -10210.2910] [Topology           ]
. (    6 sec) [    -10209.4383] [Topology           ]
. (    7 sec) [    -10207.8763] [Topology           ]
. (    8 sec) [    -10207.4713] [Topology           ]
. (    9 sec) [    -10207.3341] [Topology           ]
. (   10 sec) [    -10207.2782] [Topology           ]
. (   11 sec) [    -10207.2521] [Topology           ]

. Checking for NNIs, optimizing five branches...

. Before opt ts/t=1.000000 LK=-10207.238852
. (   22 sec) [    -10207.0932] [GTR parameters     ]
. (   22 sec) [    -10206.4617] [Alpha              ][  0.923249]
. (   22 sec) [    -10206.4617] [Topology           ]
. (   23 sec) [    -10206.3940] [Topology           ]
. (   24 sec) [    -10206.3682] [Topology           ]
. (   26 sec) [    -10206.3549] [Topology           ]
. (   27 sec) [    -10206.3476] [Topology           ]
. (   28 sec) [    -10206.3434] [Topology           ]
. (   29 sec) [    -10206.3409] [Topology           ]

. Checking for NNIs, optimizing five branches...

. Before opt ts/t=1.000000 LK=-10206.340874
. (   39 sec) [    -10206.3406] [GTR parameters     ]
. (   39 sec) [    -10206.3340] [Alpha              ][  0.930562]
. (   39 sec) [    -10206.3340] [Topology           ]
. (   40 sec) [    -10206.3313] [Topology           ]
. (   41 sec) [    -10206.3297] [Topology           ]
. (   43 sec) [    -10206.3286] [Topology           ]
. (   44 sec) [    -10206.3277] [Topology           ]

. Checking for NNIs, optimizing five branches...

. Before opt ts/t=1.000000 LK=-10206.327739
. (   53 sec) [    -10206.3277] [GTR parameters     ]
. (   53 sec) [    -10206.3276] [Alpha              ][  0.931492]
. (   53 sec) [    -10206.3276] [Topology           ]
. (   54 sec) [    -10206.3268] [Topology           ]

. Checking for NNIs, optimizing five branches...


. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -10206.326827.

. Printing the most likely tree in file 'data60.phy_phyml_tree.txt'...


. Time used 0h1m11s

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