.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data83.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : NNIs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 390 patterns found. (out of a total of 500 sites) . 100 sites without polymorphism (20.00%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-7561.691620 . ( 1 sec) [ -7552.1318] [GTR parameters ] . ( 1 sec) [ -7552.1260] [Alpha ][ 0.990008] . ( 1 sec) [ -7552.1260] [Topology ] . ( 2 sec) [ -7524.8516] [Topology ] . ( 3 sec) [ -7518.9915] [Topology ] . ( 5 sec) [ -7516.0097] [Topology ] . ( 6 sec) [ -7515.2027] [Topology ] . ( 7 sec) [ -7514.9296] [Topology ] . ( 9 sec) [ -7514.8573] [Topology ] . ( 10 sec) [ -7514.8285] [Topology ] . ( 11 sec) [ -7514.8156] [Topology ] . ( 13 sec) [ -7514.8095] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-7514.806675 . ( 23 sec) [ -7514.7032] [GTR parameters ] . ( 23 sec) [ -7514.5454] [Alpha ][ 1.039178] . ( 23 sec) [ -7514.5454] [Topology ] . ( 24 sec) [ -7514.5374] [Topology ] . ( 26 sec) [ -7514.5347] [Topology ] . ( 27 sec) [ -7514.5335] [Topology ] . ( 29 sec) [ -7514.5329] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-7514.532913 . ( 37 sec) [ -7514.5327] [GTR parameters ] . ( 37 sec) [ -7514.5325] [Alpha ][ 1.040837] . ( 37 sec) [ -7514.5325] [Topology ] . ( 38 sec) [ -7514.5323] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -7514.532262. . Printing the most likely tree in file 'data83.phy_phyml_tree.txt'... . Time used 0h0m54s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo