.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data24.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 188 patterns found. (out of a total of 500 sites) . 297 sites without polymorphism (59.40%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 4Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -10619.6696] [GTR parameters ] . ( 1 sec) [ -10453.6367] [Alpha ][ 0.500960] . ( 1 sec) [ -10438.0927] [ 952] [depth= 8] . ( 1 sec) [ -9409.4415] [ 952] [depth= 4] . ( 1 sec) [ -9304.4080] [ 944] [depth= 6] . ( 1 sec) [ -9202.4788] [ 943] [depth= 5] . ( 1 sec) [ -9170.3378] [ 936] [depth= 4] . ( 1 sec) [ -9114.6911] [ 935] [depth= 2] . ( 1 sec) [ -8975.6199] [ 932] [depth= 10] . ( 1 sec) [ -8957.9660] [ 932] [depth= 1] . ( 1 sec) [ -8891.8745] [ 914] [depth= 4] . ( 1 sec) [ -8850.7499] [ 906] [depth= 9] . ( 1 sec) [ -8723.9505] [ 885] [depth= 3] . ( 1 sec) [ -8372.8820] [ 885] [depth= 14] . ( 1 sec) [ -8008.8732] [ 856] [depth= 13] . ( 1 sec) [ -7979.5013] [ 855] [depth= 1] . ( 1 sec) [ -7971.3997] [ 855] [depth= 3] . ( 1 sec) [ -7965.4161] [ 853] [depth= 1] . ( 1 sec) [ -7896.1757] [ 852] [depth= 2] . ( 1 sec) [ -7870.2730] [ 825] [depth= 3] . ( 1 sec) [ -7802.4484] [ 825] [depth= 1] . ( 1 sec) [ -7013.1698] [ 807] [depth= 8] . ( 1 sec) [ -5565.2239] [ 761] [depth= 3] . ( 1 sec) [ -5415.6973] [ 755] [depth= 6] . ( 1 sec) [ -4951.4277] [ 724] [depth= 16] . ( 1 sec) [ -4790.7608] [ 676] [depth= 4] . ( 1 sec) [ -4770.1811] [ 674] [depth= 4] . ( 1 sec) [ -4613.0198] [ 650] [depth= 6] . ( 1 sec) [ -4583.4718] [ 646] [depth= 3] . ( 1 sec) [ -4549.4959] [ 647] [depth= 1] . ( 1 sec) [ -4330.1659] [ 601] [depth= 11] . ( 1 sec) [ -4315.2940] [ 601] [depth= 4] . ( 1 sec) [ -4193.7723] [ 583] [depth= 13] . ( 1 sec) [ -3987.8688] [ 574] [depth= 13] . ( 1 sec) [ -3975.3461] [ 569] [depth= 1] . ( 1 sec) [ -3968.9335] [ 569] [depth= 1] . ( 1 sec) [ -3930.2619] [ 561] [depth= 1] . ( 1 sec) [ -3740.6910] [ 498] [depth= 13] . ( 1 sec) [ -3701.6413] [ 492] [depth= 5] . ( 1 sec) [ -3688.5821] [ 491] [depth= 1] . ( 2 sec) [ -3678.4722] [ 489] [depth= 1] . ( 2 sec) [ -3677.0789] [ 489] [depth= 1] . ( 2 sec) [ -3653.4868] [ 481] [depth= 4] . ( 2 sec) [ -3653.2630] [ 479] [depth= 1] . ( 2 sec) [ -3648.5085] [ 479] [depth= 1] . ( 2 sec) [ -3631.8077] [ 477] [depth= 7] . ( 2 sec) [ -3622.6725] [ 476] [depth= 6] . ( 2 sec) [ -3495.8875] [ 434] [depth= 4] . ( 2 sec) [ -3460.7171] [ 430] [depth= 4] . ( 2 sec) [ -3460.4941] [ 431] [depth= 1] . ( 2 sec) [ -3458.4481] [ 431] [depth= 1] . ( 2 sec) [ -3458.3428] [ 431] [depth= 1] . ( 2 sec) [ -3458.2092] [ 431] [depth= 1] . ( 2 sec) [ -3420.1440] [ 430] [depth= 2] . ( 2 sec) [ -3374.1957] [ 423] [depth= 2] . ( 2 sec) [ -3374.1347] [ 423] [depth= 2] . ( 2 sec) [ -3371.1177] [ 421] [depth= 3] . ( 2 sec) [ -3370.8941] [ 421] [depth= 1] . ( 2 sec) [ -3361.7066] [ 420] [depth= 2] . ( 2 sec) [ -3360.1295] [ 420] [depth= 1] . ( 2 sec) [ -3360.1176] [ 419] [depth= 1] . ( 2 sec) [ -3342.9434] [ 411] [depth= 1] . ( 2 sec) [ -3342.7421] [ 411] [depth= 1] . ( 2 sec) [ -3342.7146] [ 411] [depth= 1] . ( 2 sec) [ -3305.5460] [ 407] [depth= 4] . ( 2 sec) [ -3304.2965] [ 408] [depth= 2] . ( 2 sec) [ -3210.9762] [ 399] [depth= 3] . ( 2 sec) [ -3111.7743] [ 391] [depth= 9] . ( 2 sec) [ -3078.5959] [ 384] [depth= 2] . ( 2 sec) [ -3078.5115] [ 384] [depth= 1] . ( 2 sec) [ -3003.7628] [ 380] [depth= 2] . ( 2 sec) [ -3000.8973] [ 378] [depth= 1] . ( 2 sec) [ -3000.8751] [ 378] [depth= 1] . ( 2 sec) [ -3000.0344] [ 378] [depth= 1] . ( 3 sec) [ -2884.2181] [ 377] [depth= 2] . ( 3 sec) [ -2858.0461] [ 371] [depth= 1] . ( 3 sec) [ -2845.5694] [ 371] [depth= 1] . ( 3 sec) [ -2818.2286] [ 364] [depth= 1] . ( 3 sec) [ -2800.5237] [ 356] [depth= 1] . ( 3 sec) [ -2798.8079] [ 356] [depth= 1] . ( 3 sec) [ -2789.9999] [ 357] [depth= 1] . ( 3 sec) [ -2789.8650] [ 357] [depth= 1] . ( 3 sec) [ -2788.8970] [ 357] [depth= 1] . ( 3 sec) [ -2689.5824] [ 358] [depth= 2] . ( 3 sec) [ -2671.3694] [ 348] [depth= 5] . ( 3 sec) [ -2671.3593] [ 348] [depth= 1] . ( 3 sec) [ -2646.6115] [Branch lengths ] . ( 4 sec) [ -2643.4948] [GTR parameters ] . ( 4 sec) [ -2642.3152] [Alpha ][ 0.649428] . ( 4 sec) [ -2640.8867] [ 348] [depth= 2] . ( 4 sec) [ -2639.7289] [ 347] [depth= 1] . ( 5 sec) [ -2639.2534] [ 348] [depth= 1] . ( 5 sec) [ -2559.3296] [ 317] [depth= 4] . ( 7 sec) [ -2558.8965] [ 317] [depth= 2] . ( 8 sec) [ -2558.7928] [ 317] [depth= 2] . ( 9 sec) [ -2557.5547] [Branch lengths ] . ( 9 sec) [ -2557.4707] [GTR parameters ] . ( 9 sec) [ -2555.8041] [Alpha ][ 0.951744] . ( 15 sec) [ -2555.7825] [Branch lengths ] . ( 28 sec) [ -2555.7818] [Branch lengths ] . ( 28 sec) [ -2555.7818] [Topology ] . ( 28 sec) [ -2555.7818] [Topology ] . ( 28 sec) [ -2555.7783] [GTR parameters ] . ( 28 sec) [ -2555.7782] [Alpha ][ 0.955073] . ( 28 sec) [ -2555.7782] [Topology ] . ( 29 sec) [ -2555.7782] [Topology ] . ( 29 sec) [ -2555.7782] [GTR parameters ] . ( 29 sec) [ -2555.7782] [Alpha ][ 0.955073] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2555.778180. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -8899.9052] [GTR parameters ] . ( 0 sec) [ -8727.3426] [Alpha ][ 0.500960] . ( 0 sec) [ -8516.0949] [ 1019] [depth= 3] . ( 0 sec) [ -8400.8930] [ 1014] [depth= 3] . ( 0 sec) [ -7978.0815] [ 1000] [depth= 4] . ( 0 sec) [ -7864.2514] [ 998] [depth= 6] . ( 0 sec) [ -7796.6544] [ 966] [depth= 1] . ( 1 sec) [ -7324.1038] [ 964] [depth= 4] . ( 1 sec) [ -7249.5142] [ 963] [depth= 1] . ( 1 sec) [ -7228.7594] [ 963] [depth= 3] . ( 1 sec) [ -7182.7129] [ 955] [depth= 1] . ( 1 sec) [ -7077.2819] [ 954] [depth= 8] . ( 1 sec) [ -6973.4970] [ 945] [depth= 11] . ( 1 sec) [ -6907.3380] [ 945] [depth= 3] . ( 1 sec) [ -6897.5847] [ 910] [depth= 1] . ( 1 sec) [ -6892.0972] [ 910] [depth= 4] . ( 1 sec) [ -6412.3330] [ 854] [depth= 12] . ( 1 sec) [ -6370.2966] [ 842] [depth= 12] . ( 1 sec) [ -6251.5101] [ 832] [depth= 4] . ( 1 sec) [ -6233.2920] [ 831] [depth= 5] . ( 1 sec) [ -6114.5151] [ 831] [depth= 1] . ( 1 sec) [ -6025.2576] [ 828] [depth= 6] . ( 1 sec) [ -6024.7250] [ 828] [depth= 2] . ( 1 sec) [ -5887.3681] [ 783] [depth= 2] . ( 1 sec) [ -5885.0825] [ 782] [depth= 7] . ( 1 sec) [ -5735.3455] [ 742] [depth= 11] . ( 1 sec) [ -5716.6574] [ 742] [depth= 1] . ( 1 sec) [ -5420.2954] [ 728] [depth= 10] . ( 1 sec) [ -5412.1242] [ 728] [depth= 1] . ( 1 sec) [ -5412.0837] [ 728] [depth= 1] . ( 1 sec) [ -5349.2617] [ 727] [depth= 4] . ( 1 sec) [ -5144.2182] [ 715] [depth= 13] . ( 1 sec) [ -5140.9911] [ 715] [depth= 1] . ( 1 sec) [ -4971.2730] [ 673] [depth= 2] . ( 1 sec) [ -4949.0780] [ 674] [depth= 7] . ( 1 sec) [ -4908.3752] [ 666] [depth= 4] . ( 1 sec) [ -4850.6760] [ 664] [depth= 1] . ( 1 sec) [ -4831.0058] [ 666] [depth= 11] . ( 1 sec) [ -4819.3661] [ 665] [depth= 3] . ( 1 sec) [ -4676.9596] [ 656] [depth= 3] . ( 1 sec) [ -4644.5684] [ 650] [depth= 2] . ( 1 sec) [ -4624.6471] [ 650] [depth= 7] . ( 1 sec) [ -4585.9573] [ 643] [depth= 1] . ( 1 sec) [ -4512.8116] [ 635] [depth= 3] . ( 1 sec) [ -4432.3552] [ 634] [depth= 4] . ( 1 sec) [ -4382.8335] [ 619] [depth= 6] . ( 1 sec) [ -4324.8838] [ 588] [depth= 9] . ( 1 sec) [ -3880.1933] [ 556] [depth= 13] . ( 1 sec) [ -3874.1558] [ 560] [depth= 1] . ( 1 sec) [ -3872.7762] [ 560] [depth= 9] . ( 1 sec) [ -3870.8407] [ 560] [depth= 1] . ( 1 sec) [ -3867.6537] [ 564] [depth= 1] . ( 2 sec) [ -3841.4882] [ 559] [depth= 5] . ( 2 sec) [ -3819.1291] [ 559] [depth= 2] . ( 2 sec) [ -3795.1522] [ 559] [depth= 1] . ( 2 sec) [ -3710.4592] [ 561] [depth= 7] . ( 2 sec) [ -3602.5182] [ 547] [depth= 3] . ( 2 sec) [ -3593.0679] [ 548] [depth= 2] . ( 2 sec) [ -3494.7644] [ 518] [depth= 2] . ( 2 sec) [ -3492.3107] [ 517] [depth= 1] . ( 2 sec) [ -3459.4650] [ 509] [depth= 9] . ( 2 sec) [ -3452.8678] [ 509] [depth= 1] . ( 2 sec) [ -3341.0487] [ 494] [depth= 2] . ( 2 sec) [ -3285.9165] [ 478] [depth= 2] . ( 2 sec) [ -3262.4564] [ 471] [depth= 2] . ( 2 sec) [ -3259.3781] [ 471] [depth= 1] . ( 2 sec) [ -3252.1060] [ 471] [depth= 1] . ( 2 sec) [ -3232.1492] [ 466] [depth= 1] . ( 2 sec) [ -3186.3085] [ 457] [depth= 8] . ( 2 sec) [ -3175.6242] [ 454] [depth= 5] . ( 2 sec) [ -3174.3233] [ 454] [depth= 3] . ( 2 sec) [ -3168.8696] [ 452] [depth= 3] . ( 2 sec) [ -3096.1493] [ 440] [depth= 3] . ( 2 sec) [ -3096.1347] [ 440] [depth= 1] . ( 2 sec) [ -3094.9331] [ 439] [depth= 1] . ( 2 sec) [ -3079.9739] [ 435] [depth= 1] . ( 2 sec) [ -2993.1251] [ 430] [depth= 6] . ( 2 sec) [ -2879.3409] [ 400] [depth= 1] . ( 2 sec) [ -2876.6258] [ 399] [depth= 1] . ( 2 sec) [ -2868.3411] [ 400] [depth= 1] . ( 2 sec) [ -2827.4612] [ 372] [depth= 1] . ( 2 sec) [ -2826.0903] [ 372] [depth= 4] . ( 2 sec) [ -2825.7855] [ 372] [depth= 1] . ( 2 sec) [ -2815.8650] [ 369] [depth= 5] . ( 2 sec) [ -2815.8012] [ 369] [depth= 1] . ( 2 sec) [ -2811.6533] [ 369] [depth= 1] . ( 3 sec) [ -2809.1623] [ 369] [depth= 1] . ( 3 sec) [ -2806.5502] [ 369] [depth= 2] . ( 3 sec) [ -2806.2673] [ 369] [depth= 1] . ( 3 sec) [ -2806.1688] [ 369] [depth= 1] . ( 3 sec) [ -2794.8436] [ 370] [depth= 6] . ( 3 sec) [ -2791.4642] [ 370] [depth= 1] . ( 3 sec) [ -2788.3624] [ 369] [depth= 1] . ( 3 sec) [ -2736.1985] [Branch lengths ] . ( 3 sec) [ -2731.4928] [GTR parameters ] . ( 3 sec) [ -2731.2158] [Alpha ][ 0.563021] . ( 4 sec) [ -2611.2201] [ 336] [depth= 5] . ( 4 sec) [ -2610.4758] [ 334] [depth= 5] . ( 4 sec) [ -2601.0138] [ 329] [depth= 1] . ( 4 sec) [ -2584.8794] [ 323] [depth= 1] . ( 4 sec) [ -2583.8909] [ 323] [depth= 1] . ( 4 sec) [ -2582.6981] [ 323] [depth= 2] . ( 4 sec) [ -2582.6628] [ 323] [depth= 1] . ( 4 sec) [ -2581.9979] [ 322] [depth= 2] . ( 4 sec) [ -2579.3439] [ 322] [depth= 2] . ( 4 sec) [ -2576.8409] [ 322] [depth= 2] . ( 4 sec) [ -2576.8225] [ 322] [depth= 2] . ( 4 sec) [ -2576.7798] [ 322] [depth= 1] . ( 4 sec) [ -2576.4610] [ 322] [depth= 4] . ( 4 sec) [ -2575.5898] [ 322] [depth= 1] . ( 4 sec) [ -2574.2248] [ 319] [depth= 1] . ( 4 sec) [ -2573.3002] [ 319] [depth= 1] . ( 4 sec) [ -2571.8903] [ 319] [depth= 1] . ( 5 sec) [ -2571.8416] [ 319] [depth= 1] . ( 5 sec) [ -2571.5222] [ 319] [depth= 1] . ( 5 sec) [ -2571.1575] [ 319] [depth= 1] . ( 6 sec) [ -2570.9793] [ 319] [depth= 1] . ( 6 sec) [ -2568.1940] [ 318] [depth= 2] . ( 6 sec) [ -2568.0793] [ 318] [depth= 1] . ( 6 sec) [ -2568.0630] [ 318] [depth= 1] . ( 6 sec) [ -2568.0527] [ 318] [depth= 2] . ( 7 sec) [ -2561.6256] [Branch lengths ] . ( 7 sec) [ -2561.2642] [GTR parameters ] . ( 7 sec) [ -2558.0840] [Alpha ][ 0.933724] . ( 9 sec) [ -2557.9592] [ 317] [depth= 1] . ( 10 sec) [ -2557.4512] [ 317] [depth= 1] . ( 13 sec) [ -2555.8235] [Branch lengths ] . ( 13 sec) [ -2555.8049] [GTR parameters ] . ( 13 sec) [ -2555.7999] [Alpha ][ 0.954969] . ( 19 sec) [ -2555.7779] [Branch lengths ] . ( 30 sec) [ -2555.7779] [Branch lengths ] . ( 30 sec) [ -2555.7779] [Topology ] . ( 31 sec) [ -2555.7779] [Topology ] . ( 31 sec) [ -2555.7779] [GTR parameters ] . ( 31 sec) [ -2555.7779] [Alpha ][ 0.954969] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2555.777891. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -11034.6165] [GTR parameters ] . ( 0 sec) [ -10877.4930] [Alpha ][ 0.500960] . ( 1 sec) [ -10825.3948] [ 998] [depth= 4] . ( 1 sec) [ -10778.4899] [ 994] [depth= 6] . ( 1 sec) [ -10772.3152] [ 994] [depth= 1] . ( 1 sec) [ -10766.0182] [ 994] [depth= 2] . ( 1 sec) [ -10755.4360] [ 992] [depth= 5] . ( 1 sec) [ -10667.3564] [ 992] [depth= 6] . ( 1 sec) [ -10349.3843] [ 950] [depth= 6] . ( 1 sec) [ -10281.8201] [ 950] [depth= 8] . ( 1 sec) [ -9426.6418] [ 926] [depth= 9] . ( 1 sec) [ -9383.8547] [ 918] [depth= 13] . ( 1 sec) [ -8357.2686] [ 877] [depth= 13] . ( 1 sec) [ -8287.5201] [ 870] [depth= 10] . ( 1 sec) [ -8148.6090] [ 861] [depth= 9] . ( 1 sec) [ -8024.6433] [ 861] [depth= 1] . ( 1 sec) [ -7988.1371] [ 857] [depth= 7] . ( 1 sec) [ -7979.3054] [ 857] [depth= 2] . ( 1 sec) [ -7904.6880] [ 857] [depth= 10] . ( 1 sec) [ -7901.2751] [ 857] [depth= 1] . ( 1 sec) [ -7899.1473] [ 857] [depth= 9] . ( 1 sec) [ -6963.1468] [ 827] [depth= 14] . ( 1 sec) [ -5920.1193] [ 783] [depth= 13] . ( 1 sec) [ -5832.6660] [ 781] [depth= 1] . ( 1 sec) [ -5642.1807] [ 741] [depth= 6] . ( 1 sec) [ -5552.2049] [ 732] [depth= 2] . ( 1 sec) [ -5552.0274] [ 732] [depth= 1] . ( 1 sec) [ -5529.1813] [ 729] [depth= 3] . ( 1 sec) [ -5529.0004] [ 729] [depth= 1] . ( 1 sec) [ -5528.8033] [ 729] [depth= 1] . ( 1 sec) [ -5440.4339] [ 718] [depth= 12] . ( 1 sec) [ -5424.2114] [ 718] [depth= 6] . ( 1 sec) [ -5420.9482] [ 717] [depth= 1] . ( 1 sec) [ -5404.4774] [ 719] [depth= 7] . ( 1 sec) [ -5217.5383] [ 669] [depth= 9] . ( 1 sec) [ -5200.2877] [ 667] [depth= 1] . ( 1 sec) [ -4986.9747] [ 628] [depth= 1] . ( 1 sec) [ -4893.6817] [ 614] [depth= 5] . ( 1 sec) [ -4811.9238] [ 594] [depth= 5] . ( 1 sec) [ -4751.3078] [ 595] [depth= 4] . ( 1 sec) [ -4606.7067] [ 578] [depth= 5] . ( 1 sec) [ -4602.1218] [ 571] [depth= 1] . ( 1 sec) [ -4581.6810] [ 570] [depth= 6] . ( 1 sec) [ -4570.0826] [ 568] [depth= 4] . ( 1 sec) [ -4568.9989] [ 538] [depth= 5] . ( 2 sec) [ -4530.5124] [ 528] [depth= 2] . ( 2 sec) [ -4482.4137] [ 526] [depth= 8] . ( 2 sec) [ -4475.0276] [ 525] [depth= 7] . ( 2 sec) [ -4307.8333] [ 512] [depth= 6] . ( 2 sec) [ -4307.0604] [ 513] [depth= 1] . ( 2 sec) [ -4290.1535] [ 512] [depth= 4] . ( 2 sec) [ -4283.8933] [ 509] [depth= 2] . ( 2 sec) [ -4279.8321] [ 508] [depth= 1] . ( 2 sec) [ -4276.0643] [ 494] [depth= 1] . ( 2 sec) [ -4226.5094] [ 490] [depth= 4] . ( 2 sec) [ -4131.6467] [ 481] [depth= 6] . ( 2 sec) [ -4096.1172] [ 480] [depth= 1] . ( 2 sec) [ -4092.1209] [ 466] [depth= 2] . ( 2 sec) [ -4073.1612] [ 469] [depth= 1] . ( 2 sec) [ -3672.7543] [ 469] [depth= 1] . ( 2 sec) [ -3671.8128] [ 469] [depth= 1] . ( 2 sec) [ -3570.9525] [ 471] [depth= 6] . ( 2 sec) [ -3570.8964] [ 471] [depth= 1] . ( 2 sec) [ -3539.8860] [ 502] [depth= 1] . ( 2 sec) [ -3464.0482] [ 458] [depth= 10] . ( 2 sec) [ -3210.7928] [ 416] [depth= 7] . ( 2 sec) [ -3210.3191] [ 414] [depth= 5] . ( 2 sec) [ -3160.7559] [ 420] [depth= 1] . ( 2 sec) [ -2996.2473] [ 399] [depth= 2] . ( 2 sec) [ -2986.4651] [ 399] [depth= 1] . ( 2 sec) [ -2984.6992] [ 400] [depth= 5] . ( 2 sec) [ -2983.2839] [ 400] [depth= 1] . ( 2 sec) [ -2982.5346] [ 400] [depth= 1] . ( 2 sec) [ -2982.3905] [ 400] [depth= 1] . ( 2 sec) [ -2976.0415] [ 397] [depth= 2] . ( 2 sec) [ -2955.7735] [ 397] [depth= 1] . ( 2 sec) [ -2949.8524] [ 397] [depth= 1] . ( 2 sec) [ -2841.9623] [ 359] [depth= 4] . ( 2 sec) [ -2813.1309] [ 355] [depth= 1] . ( 3 sec) [ -2800.7830] [ 355] [depth= 2] . ( 3 sec) [ -2794.1272] [ 353] [depth= 2] . ( 3 sec) [ -2783.4993] [ 346] [depth= 2] . ( 3 sec) [ -2779.9243] [ 346] [depth= 2] . ( 3 sec) [ -2765.0648] [ 346] [depth= 4] . ( 3 sec) [ -2720.3270] [ 343] [depth= 1] . ( 3 sec) [ -2720.3165] [ 343] [depth= 1] . ( 3 sec) [ -2706.6777] [ 343] [depth= 1] . ( 3 sec) [ -2704.3897] [ 343] [depth= 1] . ( 3 sec) [ -2681.6738] [ 337] [depth= 2] . ( 3 sec) [ -2661.1105] [ 329] [depth= 1] . ( 3 sec) [ -2661.0153] [ 329] [depth= 1] . ( 3 sec) [ -2660.8992] [ 329] [depth= 1] . ( 3 sec) [ -2660.6374] [ 329] [depth= 3] . ( 3 sec) [ -2606.9057] [Branch lengths ] . ( 3 sec) [ -2604.8518] [GTR parameters ] . ( 3 sec) [ -2601.3818] [Alpha ][ 0.798383] . ( 3 sec) [ -2596.5026] [ 328] [depth= 6] . ( 3 sec) [ -2596.4187] [ 328] [depth= 3] . ( 3 sec) [ -2596.1011] [ 328] [depth= 1] . ( 3 sec) [ -2596.0823] [ 328] [depth= 1] . ( 4 sec) [ -2596.0663] [ 328] [depth= 1] . ( 4 sec) [ -2596.0265] [ 328] [depth= 1] . ( 4 sec) [ -2594.9341] [ 328] [depth= 2] . ( 4 sec) [ -2577.8160] [ 322] [depth= 4] . ( 4 sec) [ -2577.7942] [ 322] [depth= 1] . ( 4 sec) [ -2576.7990] [ 323] [depth= 3] . ( 4 sec) [ -2576.7823] [ 323] [depth= 1] . ( 5 sec) [ -2576.7722] [ 323] [depth= 1] . ( 5 sec) [ -2576.5991] [ 323] [depth= 1] . ( 5 sec) [ -2576.4948] [ 323] [depth= 1] . ( 5 sec) [ -2570.3407] [ 321] [depth= 1] . ( 5 sec) [ -2570.2078] [ 321] [depth= 3] . ( 5 sec) [ -2560.6015] [ 318] [depth= 1] . ( 5 sec) [ -2560.2100] [ 318] [depth= 4] . ( 6 sec) [ -2560.0487] [ 318] [depth= 1] . ( 6 sec) [ -2559.4933] [ 318] [depth= 4] . ( 7 sec) [ -2558.8212] [ 318] [depth= 2] . ( 7 sec) [ -2558.5912] [ 318] [depth= 1] . ( 7 sec) [ -2558.4182] [ 318] [depth= 2] . ( 7 sec) [ -2557.0418] [Branch lengths ] . ( 8 sec) [ -2556.8407] [GTR parameters ] . ( 8 sec) [ -2556.5363] [Alpha ][ 0.945373] . ( 8 sec) [ -2556.5116] [ 318] [depth= 1] . ( 9 sec) [ -2556.4063] [ 317] [depth= 3] . ( 13 sec) [ -2556.2034] [Branch lengths ] . ( 13 sec) [ -2556.1760] [GTR parameters ] . ( 13 sec) [ -2556.1731] [Alpha ][ 0.961569] . ( 16 sec) [ -2555.9501] [ 317] [depth= 2] . ( 17 sec) [ -2555.8566] [ 317] [depth= 2] . ( 25 sec) [ -2555.8109] [Branch lengths ] . ( 25 sec) [ -2555.7787] [GTR parameters ] . ( 25 sec) [ -2555.7783] [Alpha ][ 0.955644] . ( 25 sec) [ -2555.7783] [Topology ] . ( 26 sec) [ -2555.7778] [Topology ] . ( 26 sec) [ -2555.7778] [GTR parameters ] . ( 26 sec) [ -2555.7778] [Alpha ][ 0.955644] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2555.777763. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -8753.7246] [GTR parameters ] . ( 0 sec) [ -8590.7948] [Alpha ][ 0.500960] . ( 0 sec) [ -8506.6146] [ 990] [depth= 8] . ( 0 sec) [ -8317.9784] [ 949] [depth= 9] . ( 0 sec) [ -8163.1956] [ 946] [depth= 2] . ( 0 sec) [ -8117.1279] [ 935] [depth= 1] . ( 0 sec) [ -7950.8563] [ 899] [depth= 3] . ( 0 sec) [ -7780.8803] [ 865] [depth= 2] . ( 0 sec) [ -7740.5214] [ 863] [depth= 2] . ( 0 sec) [ -7575.1152] [ 860] [depth= 3] . ( 0 sec) [ -7067.8525] [ 856] [depth= 6] . ( 1 sec) [ -6905.7765] [ 855] [depth= 3] . ( 1 sec) [ -6771.4977] [ 855] [depth= 2] . ( 1 sec) [ -6682.8673] [ 835] [depth= 8] . ( 1 sec) [ -6647.9554] [ 805] [depth= 6] . ( 1 sec) [ -6633.5619] [ 805] [depth= 2] . ( 1 sec) [ -6609.2068] [ 805] [depth= 2] . ( 1 sec) [ -6594.6980] [ 805] [depth= 1] . ( 1 sec) [ -6586.9518] [ 803] [depth= 8] . ( 1 sec) [ -6536.6520] [ 803] [depth= 1] . ( 1 sec) [ -6429.9711] [ 799] [depth= 10] . ( 1 sec) [ -6425.7138] [ 798] [depth= 4] . ( 1 sec) [ -6244.5396] [ 740] [depth= 20] . ( 1 sec) [ -6189.2361] [ 738] [depth= 2] . ( 1 sec) [ -5624.1604] [ 736] [depth= 12] . ( 1 sec) [ -5420.9254] [ 739] [depth= 1] . ( 1 sec) [ -5371.2569] [ 733] [depth= 17] . ( 1 sec) [ -5248.0057] [ 726] [depth= 15] . ( 1 sec) [ -5179.0967] [ 723] [depth= 15] . ( 1 sec) [ -4983.8104] [ 691] [depth= 13] . ( 1 sec) [ -4900.7104] [ 671] [depth= 8] . ( 1 sec) [ -4883.4071] [ 671] [depth= 1] . ( 1 sec) [ -4876.3451] [ 669] [depth= 5] . ( 1 sec) [ -4573.1257] [ 669] [depth= 1] . ( 1 sec) [ -4476.4331] [ 627] [depth= 8] . ( 1 sec) [ -4378.5953] [ 624] [depth= 5] . ( 1 sec) [ -4284.6067] [ 622] [depth= 5] . ( 1 sec) [ -4282.5268] [ 622] [depth= 1] . ( 1 sec) [ -4260.8166] [ 620] [depth= 2] . ( 1 sec) [ -4007.4748] [ 618] [depth= 3] . ( 1 sec) [ -3975.9171] [ 608] [depth= 4] . ( 1 sec) [ -3956.9171] [ 608] [depth= 4] . ( 1 sec) [ -3938.5410] [ 609] [depth= 13] . ( 1 sec) [ -3886.6037] [ 599] [depth= 6] . ( 1 sec) [ -3824.1610] [ 591] [depth= 1] . ( 1 sec) [ -3796.4861] [ 591] [depth= 2] . ( 1 sec) [ -3749.1648] [ 591] [depth= 2] . ( 1 sec) [ -3747.7631] [ 590] [depth= 1] . ( 1 sec) [ -3719.4643] [ 583] [depth= 11] . ( 1 sec) [ -3710.6160] [ 582] [depth= 5] . ( 1 sec) [ -3705.8305] [ 582] [depth= 1] . ( 1 sec) [ -3705.1204] [ 582] [depth= 1] . ( 1 sec) [ -3639.2734] [ 561] [depth= 4] . ( 1 sec) [ -3636.0777] [ 560] [depth= 4] . ( 1 sec) [ -3539.9046] [ 556] [depth= 7] . ( 1 sec) [ -3437.1772] [ 550] [depth= 3] . ( 1 sec) [ -3433.0756] [ 550] [depth= 1] . ( 2 sec) [ -3291.4845] [ 512] [depth= 10] . ( 2 sec) [ -3220.5401] [ 493] [depth= 3] . ( 2 sec) [ -3218.8428] [ 494] [depth= 1] . ( 2 sec) [ -3215.8057] [ 494] [depth= 1] . ( 2 sec) [ -3195.2077] [ 492] [depth= 5] . ( 2 sec) [ -3186.9472] [ 495] [depth= 5] . ( 2 sec) [ -3088.3132] [ 452] [depth= 4] . ( 2 sec) [ -3073.5167] [ 450] [depth= 1] . ( 2 sec) [ -3072.6496] [ 450] [depth= 2] . ( 2 sec) [ -2982.8846] [ 405] [depth= 13] . ( 2 sec) [ -2982.7948] [ 400] [depth= 1] . ( 2 sec) [ -2948.8908] [ 388] [depth= 3] . ( 2 sec) [ -2939.9480] [ 402] [depth= 8] . ( 2 sec) [ -2913.2286] [ 405] [depth= 2] . ( 2 sec) [ -2792.6512] [ 368] [depth= 7] . ( 2 sec) [ -2758.0703] [ 359] [depth= 1] . ( 2 sec) [ -2732.7842] [ 353] [depth= 1] . ( 2 sec) [ -2732.7525] [ 353] [depth= 1] . ( 2 sec) [ -2704.7658] [ 346] [depth= 3] . ( 2 sec) [ -2701.4431] [ 344] [depth= 1] . ( 2 sec) [ -2701.3323] [ 345] [depth= 5] . ( 2 sec) [ -2697.6921] [ 342] [depth= 2] . ( 2 sec) [ -2695.9117] [ 342] [depth= 4] . ( 3 sec) [ -2695.8349] [ 342] [depth= 1] . ( 3 sec) [ -2694.2586] [ 342] [depth= 1] . ( 3 sec) [ -2662.9579] [ 332] [depth= 1] . ( 3 sec) [ -2661.8310] [ 332] [depth= 2] . ( 3 sec) [ -2646.7598] [ 330] [depth= 2] . ( 3 sec) [ -2645.9933] [ 330] [depth= 1] . ( 3 sec) [ -2645.9617] [ 330] [depth= 1] . ( 3 sec) [ -2628.2376] [Branch lengths ] . ( 3 sec) [ -2626.2004] [GTR parameters ] . ( 3 sec) [ -2623.8848] [Alpha ][ 0.735532] . ( 3 sec) [ -2621.7030] [ 329] [depth= 4] . ( 3 sec) [ -2601.1422] [ 329] [depth= 1] . ( 3 sec) [ -2589.4028] [ 326] [depth= 6] . ( 3 sec) [ -2589.0867] [ 327] [depth= 2] . ( 4 sec) [ -2589.0662] [ 326] [depth= 3] . ( 4 sec) [ -2588.8880] [ 326] [depth= 1] . ( 4 sec) [ -2583.3791] [ 325] [depth= 2] . ( 4 sec) [ -2582.7882] [ 326] [depth= 1] . ( 4 sec) [ -2582.0057] [ 326] [depth= 4] . ( 4 sec) [ -2579.9543] [ 325] [depth= 1] . ( 4 sec) [ -2579.0768] [ 325] [depth= 3] . ( 5 sec) [ -2578.9654] [ 325] [depth= 1] . ( 5 sec) [ -2577.1503] [ 328] [depth= 3] . ( 5 sec) [ -2577.0715] [ 328] [depth= 1] . ( 5 sec) [ -2560.9606] [ 320] [depth= 2] . ( 6 sec) [ -2560.9443] [ 320] [depth= 1] . ( 6 sec) [ -2560.8546] [ 320] [depth= 1] . ( 6 sec) [ -2558.6235] [ 318] [depth= 1] . ( 8 sec) [ -2557.3742] [Branch lengths ] . ( 8 sec) [ -2557.1672] [GTR parameters ] . ( 8 sec) [ -2556.4731] [Alpha ][ 0.946571] . ( 9 sec) [ -2555.9336] [ 317] [depth= 3] . ( 9 sec) [ -2555.8374] [ 317] [depth= 2] . ( 13 sec) [ -2555.7897] [Branch lengths ] . ( 14 sec) [ -2555.7795] [GTR parameters ] . ( 14 sec) [ -2555.7787] [Alpha ][ 0.955369] . ( 25 sec) [ -2555.7780] [Branch lengths ] . ( 25 sec) [ -2555.7780] [Topology ] . ( 26 sec) [ -2555.7780] [Topology ] . ( 26 sec) [ -2555.7780] [GTR parameters ] . ( 26 sec) [ -2555.7780] [Alpha ][ 0.955369] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2555.778011. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -10994.8762] [GTR parameters ] . ( 0 sec) [ -10818.1448] [Alpha ][ 0.500960] . ( 0 sec) [ -10713.2149] [ 1044] [depth= 6] . ( 0 sec) [ -10625.7895] [ 1034] [depth= 11] . ( 0 sec) [ -10501.5720] [ 1031] [depth= 6] . ( 0 sec) [ -10468.5495] [ 1031] [depth= 1] . ( 0 sec) [ -10394.7424] [ 1025] [depth= 3] . ( 0 sec) [ -10242.9134] [ 1025] [depth= 3] . ( 1 sec) [ -10242.5212] [ 1025] [depth= 5] . ( 1 sec) [ -9961.2232] [ 1008] [depth= 11] . ( 1 sec) [ -9933.6602] [ 1000] [depth= 8] . ( 1 sec) [ -9826.8108] [ 987] [depth= 7] . ( 1 sec) [ -9178.3444] [ 987] [depth= 17] . ( 1 sec) [ -8405.3768] [ 972] [depth= 16] . ( 1 sec) [ -8324.6700] [ 961] [depth= 5] . ( 1 sec) [ -8029.2392] [ 961] [depth= 3] . ( 1 sec) [ -7805.2251] [ 959] [depth= 1] . ( 1 sec) [ -7789.5122] [ 959] [depth= 2] . ( 1 sec) [ -7738.6126] [ 954] [depth= 9] . ( 1 sec) [ -7687.3225] [ 950] [depth= 3] . ( 1 sec) [ -6624.4613] [ 895] [depth= 10] . ( 1 sec) [ -6518.8661] [ 879] [depth= 3] . ( 1 sec) [ -6188.9410] [ 858] [depth= 8] . ( 1 sec) [ -6143.6139] [ 857] [depth= 2] . ( 1 sec) [ -6110.8188] [ 848] [depth= 5] . ( 1 sec) [ -6026.7184] [ 832] [depth= 4] . ( 1 sec) [ -5773.4231] [ 839] [depth= 9] . ( 1 sec) [ -5692.7850] [ 828] [depth= 10] . ( 1 sec) [ -5604.3194] [ 806] [depth= 9] . ( 1 sec) [ -5579.8003] [ 800] [depth= 1] . ( 1 sec) [ -5533.5200] [ 793] [depth= 2] . ( 1 sec) [ -5492.9039] [ 785] [depth= 2] . ( 1 sec) [ -5361.7048] [ 738] [depth= 2] . ( 1 sec) [ -5360.2195] [ 738] [depth= 1] . ( 1 sec) [ -5219.0636] [ 736] [depth= 8] . ( 1 sec) [ -5205.3175] [ 736] [depth= 1] . ( 1 sec) [ -5202.0773] [ 736] [depth= 2] . ( 1 sec) [ -4837.1378] [ 731] [depth= 8] . ( 1 sec) [ -4837.0053] [ 731] [depth= 1] . ( 1 sec) [ -4743.3623] [ 722] [depth= 6] . ( 1 sec) [ -4717.1958] [ 714] [depth= 2] . ( 1 sec) [ -4477.7982] [ 671] [depth= 5] . ( 1 sec) [ -4461.1068] [ 667] [depth= 7] . ( 1 sec) [ -4377.5882] [ 626] [depth= 5] . ( 1 sec) [ -4360.0845] [ 622] [depth= 1] . ( 1 sec) [ -4313.6710] [ 622] [depth= 2] . ( 1 sec) [ -4295.5396] [ 618] [depth= 2] . ( 1 sec) [ -4210.2501] [ 571] [depth= 11] . ( 2 sec) [ -4135.7869] [ 565] [depth= 8] . ( 2 sec) [ -3967.1458] [ 532] [depth= 2] . ( 2 sec) [ -3640.0620] [ 530] [depth= 6] . ( 2 sec) [ -3632.6059] [ 530] [depth= 1] . ( 2 sec) [ -3456.7950] [ 529] [depth= 10] . ( 2 sec) [ -3439.5412] [ 488] [depth= 3] . ( 2 sec) [ -3430.1081] [ 488] [depth= 4] . ( 2 sec) [ -3429.1533] [ 488] [depth= 1] . ( 2 sec) [ -3390.6610] [ 481] [depth= 2] . ( 2 sec) [ -3384.9786] [ 480] [depth= 1] . ( 2 sec) [ -3384.6707] [ 480] [depth= 2] . ( 2 sec) [ -3384.4135] [ 478] [depth= 3] . ( 2 sec) [ -3380.2351] [ 478] [depth= 1] . ( 2 sec) [ -3250.3100] [ 422] [depth= 10] . ( 2 sec) [ -3175.1944] [ 417] [depth= 7] . ( 2 sec) [ -3122.2733] [ 416] [depth= 1] . ( 2 sec) [ -3071.6945] [ 409] [depth= 2] . ( 2 sec) [ -3045.4231] [ 401] [depth= 2] . ( 2 sec) [ -2953.9437] [ 373] [depth= 1] . ( 2 sec) [ -2952.4153] [ 373] [depth= 1] . ( 2 sec) [ -2950.8103] [ 373] [depth= 1] . ( 2 sec) [ -2899.8833] [ 373] [depth= 1] . ( 2 sec) [ -2899.8588] [ 373] [depth= 1] . ( 2 sec) [ -2868.8897] [ 373] [depth= 1] . ( 2 sec) [ -2867.9329] [ 372] [depth= 1] . ( 3 sec) [ -2841.5269] [ 375] [depth= 4] . ( 3 sec) [ -2841.4563] [ 375] [depth= 1] . ( 3 sec) [ -2825.9907] [ 373] [depth= 1] . ( 3 sec) [ -2825.1780] [ 374] [depth= 5] . ( 3 sec) [ -2729.5754] [ 344] [depth= 2] . ( 3 sec) [ -2704.9141] [ 343] [depth= 2] . ( 3 sec) [ -2704.7117] [ 343] [depth= 1] . ( 3 sec) [ -2683.6761] [ 336] [depth= 2] . ( 3 sec) [ -2610.2631] [Branch lengths ] . ( 3 sec) [ -2606.2233] [GTR parameters ] . ( 3 sec) [ -2603.2802] [Alpha ][ 0.748890] . ( 3 sec) [ -2594.5359] [ 332] [depth= 5] . ( 3 sec) [ -2594.4811] [ 332] [depth= 1] . ( 3 sec) [ -2594.4502] [ 332] [depth= 1] . ( 4 sec) [ -2594.3890] [ 332] [depth= 1] . ( 4 sec) [ -2585.7634] [ 331] [depth= 2] . ( 4 sec) [ -2585.7170] [ 331] [depth= 1] . ( 4 sec) [ -2585.5212] [ 331] [depth= 1] . ( 4 sec) [ -2585.0158] [ 331] [depth= 1] . ( 4 sec) [ -2583.2655] [ 329] [depth= 2] . ( 4 sec) [ -2582.9348] [ 329] [depth= 1] . ( 4 sec) [ -2577.8424] [ 327] [depth= 1] . ( 4 sec) [ -2577.8234] [ 327] [depth= 1] . ( 4 sec) [ -2577.7787] [ 327] [depth= 2] . ( 4 sec) [ -2577.7677] [ 327] [depth= 1] . ( 4 sec) [ -2577.7335] [ 327] [depth= 1] . ( 4 sec) [ -2577.6646] [ 327] [depth= 1] . ( 5 sec) [ -2577.3319] [ 326] [depth= 1] . ( 5 sec) [ -2577.2920] [ 326] [depth= 1] . ( 5 sec) [ -2576.8801] [ 323] [depth= 2] . ( 5 sec) [ -2576.8674] [ 323] [depth= 1] . ( 5 sec) [ -2576.8244] [ 323] [depth= 1] . ( 5 sec) [ -2576.7984] [ 323] [depth= 1] . ( 5 sec) [ -2563.4721] [ 317] [depth= 1] . ( 5 sec) [ -2563.4575] [ 317] [depth= 1] . ( 6 sec) [ -2563.4326] [ 317] [depth= 1] . ( 6 sec) [ -2563.3797] [ 317] [depth= 1] . ( 6 sec) [ -2563.2441] [ 319] [depth= 1] . ( 6 sec) [ -2562.5511] [ 319] [depth= 1] . ( 6 sec) [ -2560.1241] [ 317] [depth= 1] . ( 6 sec) [ -2560.0839] [ 317] [depth= 1] . ( 6 sec) [ -2560.0716] [ 317] [depth= 1] . ( 6 sec) [ -2559.9909] [ 317] [depth= 1] . ( 7 sec) [ -2559.7478] [ 317] [depth= 3] . ( 7 sec) [ -2559.7263] [ 317] [depth= 1] . ( 7 sec) [ -2558.2839] [Branch lengths ] . ( 7 sec) [ -2558.0811] [GTR parameters ] . ( 7 sec) [ -2557.5098] [Alpha ][ 0.940301] . ( 13 sec) [ -2557.2298] [Branch lengths ] . ( 25 sec) [ -2556.1829] [Branch lengths ] . ( 25 sec) [ -2556.1829] [Topology ] . ( 25 sec) [ -2555.8035] [Topology ] . ( 25 sec) [ -2555.7843] [Topology ] . ( 26 sec) [ -2555.7831] [Topology ] . ( 26 sec) [ -2555.7830] [Topology ] . ( 26 sec) [ -2555.7802] [GTR parameters ] . ( 26 sec) [ -2555.7778] [Alpha ][ 0.955590] . ( 26 sec) [ -2555.7778] [Topology ] . ( 27 sec) [ -2555.7778] [Topology ] . ( 27 sec) [ -2555.7778] [GTR parameters ] . ( 27 sec) [ -2555.7778] [Alpha ][ 0.955590] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2555.777786. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-2563.890838 . ( 0 sec) [ -2561.1245] [GTR parameters ] . ( 0 sec) [ -2561.1122] [Alpha ][ 0.963403] . ( 0 sec) [ -2561.1122] [Topology ] . ( 1 sec) [ -2557.0915] [Topology ] . ( 1 sec) [ -2556.3937] [Topology ] . ( 1 sec) [ -2556.2503] [Topology ] . ( 2 sec) [ -2556.2171] [Topology ] . ( 2 sec) [ -2556.2091] [Topology ] . ( 2 sec) [ -2556.2070] [Topology ] . ( 3 sec) [ -2556.2063] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-2556.206263 . ( 5 sec) [ -2556.1709] [GTR parameters ] . ( 5 sec) [ -2556.1709] [Alpha ][ 0.961410] . ( 5 sec) [ -2556.1709] [Topology ] . ( 5 sec) [ -2556.1706] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-2556.170629 . ( 7 sec) [ -2556.1706] [GTR parameters ] . ( 7 sec) [ -2556.1706] [Alpha ][ 0.961410] . ( 7 sec) [ -2556.1706] [Topology ] . ( 8 sec) [ -2556.1706] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 12 sec) [ -2561.1245] [GTR parameters ] . ( 12 sec) [ -2561.1122] [Alpha ][ 0.963403] . ( 12 sec) [ -2560.9395] [ 317] [depth= 1] . ( 12 sec) [ -2560.7924] [ 317] [depth= 1] . ( 13 sec) [ -2560.6722] [ 317] [depth= 1] . ( 13 sec) [ -2560.6174] [ 317] [depth= 1] . ( 13 sec) [ -2560.5276] [ 317] [depth= 1] . ( 13 sec) [ -2560.3906] [ 317] [depth= 1] . ( 14 sec) [ -2560.3155] [ 317] [depth= 1] . ( 14 sec) [ -2560.2124] [ 317] [depth= 1] . ( 14 sec) [ -2560.1996] [ 317] [depth= 1] . ( 14 sec) [ -2559.9676] [ 317] [depth= 1] . ( 14 sec) [ -2559.8910] [ 317] [depth= 1] . ( 15 sec) [ -2559.4269] [ 317] [depth= 2] . ( 15 sec) [ -2559.3169] [ 317] [depth= 2] . ( 15 sec) [ -2557.5061] [ 317] [depth= 2] . ( 15 sec) [ -2557.4937] [ 317] [depth= 2] . ( 16 sec) [ -2556.7195] [ 317] [depth= 1] . ( 16 sec) [ -2556.7041] [ 317] [depth= 1] . ( 16 sec) [ -2556.4906] [ 317] [depth= 1] . ( 17 sec) [ -2555.9054] [Branch lengths ] . ( 17 sec) [ -2555.8171] [GTR parameters ] . ( 17 sec) [ -2555.8163] [Alpha ][ 0.954713] . ( 18 sec) [ -2555.7941] [ 317] [depth= 1] . ( 23 sec) [ -2555.7773] [Branch lengths ] . ( 23 sec) [ -2555.7773] [GTR parameters ] . ( 23 sec) [ -2555.7773] [Alpha ][ 0.954713] . ( 34 sec) [ -2555.7772] [Branch lengths ] . ( 34 sec) [ -2555.7772] [Topology ] . ( 35 sec) [ -2555.7772] [Topology ] . ( 35 sec) [ -2555.7771] [GTR parameters ] . ( 35 sec) [ -2555.7771] [Alpha ][ 0.955667] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -2556.170608 . Log likelihood obtained after SPR moves : -2555.777145 . Log likelihood of the current tree: -2555.777145. . Printing the most likely tree in file 'data24.phy_phyml_tree.txt'... . Best log likelihood : -2555.777145 . Time used 0h0m37s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo