.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data51.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 400 patterns found. (out of a total of 500 sites) . 96 sites without polymorphism (19.20%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -17653.2234] [GTR parameters ] . ( 1 sec) [ -17243.9299] [Alpha ][ 0.500960] . ( 1 sec) [ -16982.0097] [ 3861] [depth= 4] . ( 1 sec) [ -16738.0170] [ 3785] [depth= 6] . ( 1 sec) [ -16265.5727] [ 3778] [depth= 6] . ( 1 sec) [ -16243.8001] [ 3769] [depth= 5] . ( 1 sec) [ -16001.4555] [ 3707] [depth= 2] . ( 1 sec) [ -15947.9823] [ 3708] [depth= 5] . ( 1 sec) [ -15936.2944] [ 3702] [depth= 1] . ( 1 sec) [ -15923.1036] [ 3703] [depth= 7] . ( 1 sec) [ -15923.0801] [ 3709] [depth= 1] . ( 1 sec) [ -15909.4022] [ 3690] [depth= 5] . ( 1 sec) [ -15723.3787] [ 3639] [depth= 1] . ( 1 sec) [ -15581.1570] [ 3591] [depth= 6] . ( 1 sec) [ -15370.9729] [ 3497] [depth= 9] . ( 1 sec) [ -15309.5207] [ 3486] [depth= 3] . ( 1 sec) [ -15148.3616] [ 3482] [depth= 4] . ( 1 sec) [ -15095.2530] [ 3431] [depth= 1] . ( 1 sec) [ -14975.2963] [ 3426] [depth= 4] . ( 2 sec) [ -14906.3433] [ 3421] [depth= 2] . ( 2 sec) [ -14752.8890] [ 3397] [depth= 1] . ( 2 sec) [ -14684.4058] [ 3339] [depth= 4] . ( 2 sec) [ -14661.6739] [ 3338] [depth= 1] . ( 2 sec) [ -14431.6419] [ 3295] [depth= 8] . ( 2 sec) [ -14402.2130] [ 3255] [depth= 6] . ( 2 sec) [ -14263.3793] [ 3233] [depth= 4] . ( 2 sec) [ -13764.2383] [ 3165] [depth= 1] . ( 2 sec) [ -13735.4388] [ 3131] [depth= 13] . ( 2 sec) [ -13364.8182] [ 2977] [depth= 9] . ( 2 sec) [ -13207.0984] [ 2953] [depth= 3] . ( 2 sec) [ -13065.1917] [ 2923] [depth= 2] . ( 2 sec) [ -12874.1866] [ 2852] [depth= 5] . ( 2 sec) [ -12861.8010] [ 2851] [depth= 1] . ( 2 sec) [ -12815.0229] [ 2867] [depth= 1] . ( 2 sec) [ -12418.3111] [ 2731] [depth= 6] . ( 2 sec) [ -12190.4277] [ 2673] [depth= 15] . ( 2 sec) [ -12180.6947] [ 2671] [depth= 1] . ( 2 sec) [ -12180.0495] [ 2670] [depth= 1] . ( 2 sec) [ -11917.6159] [ 2596] [depth= 5] . ( 2 sec) [ -11911.3976] [ 2588] [depth= 1] . ( 3 sec) [ -11836.5677] [ 2580] [depth= 2] . ( 3 sec) [ -11764.0608] [ 2583] [depth= 6] . ( 3 sec) [ -11706.5412] [ 2577] [depth= 1] . ( 3 sec) [ -11647.1139] [ 2560] [depth= 8] . ( 3 sec) [ -11620.5415] [ 2533] [depth= 1] . ( 3 sec) [ -11615.3296] [ 2534] [depth= 1] . ( 3 sec) [ -11608.3617] [ 2528] [depth= 4] . ( 3 sec) [ -11564.6518] [ 2543] [depth= 2] . ( 3 sec) [ -11282.1622] [ 2501] [depth= 3] . ( 3 sec) [ -11163.5467] [ 2491] [depth= 4] . ( 3 sec) [ -11022.6339] [ 2473] [depth= 1] . ( 3 sec) [ -10827.4600] [ 2467] [depth= 6] . ( 3 sec) [ -10713.4687] [ 2456] [depth= 1] . ( 3 sec) [ -10531.7509] [ 2380] [depth= 7] . ( 3 sec) [ -10373.0493] [ 2366] [depth= 3] . ( 3 sec) [ -10360.7739] [ 2361] [depth= 1] . ( 3 sec) [ -10356.0837] [ 2356] [depth= 1] . ( 4 sec) [ -10242.4453] [ 2337] [depth= 1] . ( 4 sec) [ -10070.5653] [ 2270] [depth= 8] . ( 4 sec) [ -10054.4160] [ 2263] [depth= 1] . ( 4 sec) [ -10053.0129] [ 2252] [depth= 1] . ( 4 sec) [ -9860.7352] [ 2131] [depth= 11] . ( 4 sec) [ -9846.8578] [ 2126] [depth= 1] . ( 4 sec) [ -9662.3739] [ 2081] [depth= 4] . ( 4 sec) [ -9504.8184] [ 2026] [depth= 10] . ( 4 sec) [ -9502.4297] [ 2025] [depth= 1] . ( 4 sec) [ -9427.8578] [ 1994] [depth= 4] . ( 4 sec) [ -9422.0712] [ 1995] [depth= 1] . ( 4 sec) [ -9230.5372] [ 1938] [depth= 6] . ( 4 sec) [ -9197.3662] [ 1936] [depth= 5] . ( 4 sec) [ -9114.8723] [ 1901] [depth= 8] . ( 4 sec) [ -9101.8568] [ 1899] [depth= 1] . ( 4 sec) [ -8853.7823] [ 1834] [depth= 3] . ( 4 sec) [ -8847.6266] [ 1851] [depth= 3] . ( 4 sec) [ -8678.5589] [ 1759] [depth= 4] . ( 4 sec) [ -8655.9981] [ 1757] [depth= 1] . ( 5 sec) [ -8634.9306] [ 1750] [depth= 1] . ( 5 sec) [ -8499.5376] [Branch lengths ] . ( 5 sec) [ -8497.2625] [GTR parameters ] . ( 5 sec) [ -8469.0230] [Alpha ][ 0.879930] . ( 6 sec) [ -8447.0632] [ 1738] [depth= 2] . ( 6 sec) [ -8446.9497] [ 1737] [depth= 1] . ( 6 sec) [ -8439.7874] [ 1733] [depth= 1] . ( 6 sec) [ -8439.0962] [ 1734] [depth= 1] . ( 6 sec) [ -8438.6417] [ 1734] [depth= 1] . ( 6 sec) [ -8436.9672] [ 1728] [depth= 1] . ( 6 sec) [ -8436.6772] [ 1724] [depth= 1] . ( 6 sec) [ -8434.2994] [ 1720] [depth= 1] . ( 7 sec) [ -8431.7119] [ 1723] [depth= 1] . ( 7 sec) [ -8429.3178] [ 1721] [depth= 1] . ( 7 sec) [ -8426.8502] [ 1718] [depth= 1] . ( 8 sec) [ -8424.8398] [ 1718] [depth= 1] . ( 8 sec) [ -8424.4439] [ 1721] [depth= 1] . ( 8 sec) [ -8424.0788] [ 1722] [depth= 1] . ( 9 sec) [ -8414.1426] [Branch lengths ] . ( 9 sec) [ -8414.1062] [GTR parameters ] . ( 9 sec) [ -8413.8377] [Alpha ][ 0.931791] . ( 12 sec) [ -8412.7205] [Branch lengths ] . ( 24 sec) [ -8412.5823] [ 1718] [depth= 1] . ( 36 sec) [ -8412.2519] [Branch lengths ] . ( 36 sec) [ -8412.2470] [GTR parameters ] . ( 36 sec) [ -8412.2374] [Alpha ][ 0.942123] . ( 36 sec) [ -8412.2374] [Topology ] . ( 36 sec) [ -8412.2049] [Topology ] . ( 37 sec) [ -8412.1937] [Topology ] . ( 38 sec) [ -8412.1881] [Topology ] . ( 39 sec) [ -8412.1852] [Topology ] . ( 40 sec) [ -8412.1837] [Topology ] . ( 40 sec) [ -8412.1828] [Topology ] . ( 40 sec) [ -8412.1828] [GTR parameters ] . ( 40 sec) [ -8412.1828] [Alpha ][ 0.942123] . ( 41 sec) [ -8412.1828] [Topology ] . ( 41 sec) [ -8412.1823] [Topology ] . ( 41 sec) [ -8412.1823] [GTR parameters ] . ( 41 sec) [ -8412.1823] [Alpha ][ 0.942123] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8412.182316. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -17070.6797] [GTR parameters ] . ( 0 sec) [ -16698.8213] [Alpha ][ 0.500960] . ( 0 sec) [ -16583.3982] [ 3945] [depth= 3] . ( 0 sec) [ -16334.0617] [ 3890] [depth= 3] . ( 1 sec) [ -16239.3131] [ 3866] [depth= 4] . ( 1 sec) [ -16159.2258] [ 3867] [depth= 4] . ( 1 sec) [ -16118.1109] [ 3854] [depth= 1] . ( 1 sec) [ -16099.3853] [ 3851] [depth= 2] . ( 1 sec) [ -16008.9546] [ 3848] [depth= 1] . ( 1 sec) [ -15890.0211] [ 3847] [depth= 3] . ( 1 sec) [ -15655.7511] [ 3805] [depth= 1] . ( 1 sec) [ -15601.9677] [ 3785] [depth= 3] . ( 1 sec) [ -15476.4294] [ 3715] [depth= 4] . ( 1 sec) [ -15394.3276] [ 3712] [depth= 3] . ( 1 sec) [ -15174.9321] [ 3626] [depth= 10] . ( 1 sec) [ -15084.0110] [ 3620] [depth= 3] . ( 1 sec) [ -14764.1004] [ 3497] [depth= 10] . ( 1 sec) [ -14617.6896] [ 3454] [depth= 7] . ( 1 sec) [ -14539.0459] [ 3424] [depth= 5] . ( 1 sec) [ -14533.1241] [ 3417] [depth= 1] . ( 1 sec) [ -14025.9140] [ 3418] [depth= 1] . ( 1 sec) [ -14024.9377] [ 3413] [depth= 1] . ( 1 sec) [ -13928.2708] [ 3407] [depth= 4] . ( 1 sec) [ -13849.8094] [ 3344] [depth= 2] . ( 1 sec) [ -13476.4894] [ 3255] [depth= 11] . ( 1 sec) [ -13425.7802] [ 3238] [depth= 3] . ( 1 sec) [ -13065.7629] [ 3137] [depth= 13] . ( 1 sec) [ -12909.6051] [ 3121] [depth= 4] . ( 1 sec) [ -12784.2202] [ 3067] [depth= 5] . ( 2 sec) [ -12487.3023] [ 2984] [depth= 13] . ( 2 sec) [ -12464.0118] [ 2981] [depth= 1] . ( 2 sec) [ -12254.5252] [ 2873] [depth= 2] . ( 2 sec) [ -11958.8680] [ 2791] [depth= 2] . ( 2 sec) [ -11785.7149] [ 2758] [depth= 1] . ( 2 sec) [ -11784.5603] [ 2765] [depth= 5] . ( 2 sec) [ -11763.5423] [ 2715] [depth= 8] . ( 2 sec) [ -11529.7648] [ 2707] [depth= 2] . ( 2 sec) [ -11419.2055] [ 2656] [depth= 13] . ( 2 sec) [ -11154.3061] [ 2552] [depth= 11] . ( 2 sec) [ -11140.3907] [ 2549] [depth= 1] . ( 2 sec) [ -11092.8464] [ 2543] [depth= 5] . ( 2 sec) [ -10853.1041] [ 2509] [depth= 8] . ( 2 sec) [ -10835.6996] [ 2524] [depth= 11] . ( 2 sec) [ -10695.5417] [ 2502] [depth= 1] . ( 2 sec) [ -10595.0576] [ 2490] [depth= 13] . ( 2 sec) [ -10352.2132] [ 2367] [depth= 18] . ( 2 sec) [ -10124.5975] [ 2308] [depth= 11] . ( 2 sec) [ -10077.4926] [ 2292] [depth= 2] . ( 2 sec) [ -10040.8920] [ 2278] [depth= 1] . ( 3 sec) [ -10038.5477] [ 2275] [depth= 1] . ( 3 sec) [ -10035.3108] [ 2272] [depth= 1] . ( 3 sec) [ -10028.2610] [ 2268] [depth= 1] . ( 3 sec) [ -9963.0921] [ 2251] [depth= 9] . ( 3 sec) [ -9805.1900] [ 2182] [depth= 2] . ( 3 sec) [ -9771.4468] [ 2177] [depth= 1] . ( 3 sec) [ -9770.5018] [ 2181] [depth= 1] . ( 3 sec) [ -9768.6381] [ 2174] [depth= 3] . ( 3 sec) [ -9732.3163] [ 2140] [depth= 4] . ( 3 sec) [ -9649.6042] [ 2104] [depth= 2] . ( 3 sec) [ -9646.3938] [ 2101] [depth= 1] . ( 3 sec) [ -9578.8547] [ 2093] [depth= 7] . ( 3 sec) [ -9551.8100] [ 2072] [depth= 1] . ( 3 sec) [ -9445.9420] [ 2035] [depth= 4] . ( 3 sec) [ -9348.4136] [ 2029] [depth= 3] . ( 3 sec) [ -9338.0261] [ 2023] [depth= 7] . ( 3 sec) [ -9178.9684] [ 2035] [depth= 1] . ( 3 sec) [ -9124.0767] [ 2028] [depth= 3] . ( 3 sec) [ -9121.9964] [ 2032] [depth= 1] . ( 3 sec) [ -9082.7498] [ 2027] [depth= 1] . ( 4 sec) [ -9073.0283] [ 2024] [depth= 1] . ( 4 sec) [ -9072.5448] [ 2029] [depth= 2] . ( 4 sec) [ -8998.7485] [ 1947] [depth= 6] . ( 4 sec) [ -8997.9309] [ 1941] [depth= 1] . ( 4 sec) [ -8844.1794] [ 1836] [depth= 7] . ( 4 sec) [ -8690.6886] [ 1795] [depth= 2] . ( 4 sec) [ -8687.9843] [ 1795] [depth= 1] . ( 4 sec) [ -8680.2856] [ 1791] [depth= 2] . ( 4 sec) [ -8611.7784] [Branch lengths ] . ( 5 sec) [ -8609.2432] [GTR parameters ] . ( 5 sec) [ -8583.7205] [Alpha ][ 0.850017] . ( 5 sec) [ -8582.5980] [ 1788] [depth= 1] . ( 5 sec) [ -8582.3647] [ 1787] [depth= 1] . ( 5 sec) [ -8489.1902] [ 1743] [depth= 1] . ( 5 sec) [ -8489.0222] [ 1744] [depth= 1] . ( 5 sec) [ -8474.0026] [ 1740] [depth= 1] . ( 6 sec) [ -8465.9995] [ 1738] [depth= 1] . ( 6 sec) [ -8461.8687] [ 1737] [depth= 1] . ( 6 sec) [ -8457.4064] [ 1734] [depth= 1] . ( 6 sec) [ -8439.9151] [ 1733] [depth= 1] . ( 6 sec) [ -8439.9014] [ 1731] [depth= 1] . ( 7 sec) [ -8435.9650] [ 1732] [depth= 1] . ( 7 sec) [ -8432.2779] [ 1725] [depth= 2] . ( 7 sec) [ -8425.8011] [ 1719] [depth= 2] . ( 7 sec) [ -8425.6225] [ 1720] [depth= 1] . ( 7 sec) [ -8423.9706] [ 1722] [depth= 1] . ( 8 sec) [ -8414.5686] [Branch lengths ] . ( 9 sec) [ -8414.4478] [GTR parameters ] . ( 9 sec) [ -8413.7830] [Alpha ][ 0.929935] . ( 12 sec) [ -8412.7737] [Branch lengths ] . ( 17 sec) [ -8412.5363] [ 1718] [depth= 1] . ( 33 sec) [ -8412.2494] [Branch lengths ] . ( 34 sec) [ -8412.2449] [GTR parameters ] . ( 34 sec) [ -8412.2340] [Alpha ][ 0.940946] . ( 34 sec) [ -8412.2340] [Topology ] . ( 35 sec) [ -8412.2034] [Topology ] . ( 35 sec) [ -8412.1929] [Topology ] . ( 36 sec) [ -8412.1878] [Topology ] . ( 37 sec) [ -8412.1851] [Topology ] . ( 38 sec) [ -8412.1837] [Topology ] . ( 38 sec) [ -8412.1830] [Topology ] . ( 38 sec) [ -8412.1829] [GTR parameters ] . ( 39 sec) [ -8412.1827] [Alpha ][ 0.942326] . ( 39 sec) [ -8412.1827] [Topology ] . ( 39 sec) [ -8412.1823] [Topology ] . ( 39 sec) [ -8412.1823] [GTR parameters ] . ( 39 sec) [ -8412.1823] [Alpha ][ 0.942326] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8412.182257. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18050.5739] [GTR parameters ] . ( 1 sec) [ -17666.1112] [Alpha ][ 0.500960] . ( 1 sec) [ -17452.1393] [ 3904] [depth= 1] . ( 1 sec) [ -16858.1157] [ 3845] [depth= 8] . ( 1 sec) [ -16799.8164] [ 3823] [depth= 3] . ( 1 sec) [ -16717.0810] [ 3815] [depth= 1] . ( 1 sec) [ -16547.0272] [ 3724] [depth= 2] . ( 1 sec) [ -16485.3247] [ 3718] [depth= 7] . ( 1 sec) [ -16294.9058] [ 3703] [depth= 11] . ( 1 sec) [ -15910.6829] [ 3579] [depth= 8] . ( 1 sec) [ -15874.9479] [ 3585] [depth= 5] . ( 1 sec) [ -15858.7509] [ 3572] [depth= 9] . ( 1 sec) [ -15833.9036] [ 3567] [depth= 1] . ( 1 sec) [ -15649.9557] [ 3548] [depth= 3] . ( 1 sec) [ -15484.7060] [ 3537] [depth= 1] . ( 1 sec) [ -15417.8763] [ 3530] [depth= 11] . ( 1 sec) [ -15292.5567] [ 3451] [depth= 5] . ( 1 sec) [ -14936.8957] [ 3426] [depth= 6] . ( 1 sec) [ -14804.6280] [ 3383] [depth= 1] . ( 1 sec) [ -14771.5074] [ 3363] [depth= 11] . ( 2 sec) [ -14626.8385] [ 3334] [depth= 6] . ( 2 sec) [ -14275.0278] [ 3255] [depth= 7] . ( 2 sec) [ -14180.6201] [ 3260] [depth= 2] . ( 2 sec) [ -14061.7172] [ 3221] [depth= 1] . ( 2 sec) [ -14031.1669] [ 3190] [depth= 9] . ( 2 sec) [ -13821.2813] [ 3086] [depth= 8] . ( 2 sec) [ -13529.5056] [ 2934] [depth= 7] . ( 2 sec) [ -13504.3027] [ 2931] [depth= 1] . ( 2 sec) [ -13403.0679] [ 2919] [depth= 2] . ( 2 sec) [ -13397.5818] [ 2918] [depth= 1] . ( 2 sec) [ -13367.6976] [ 2912] [depth= 4] . ( 2 sec) [ -13189.8062] [ 2839] [depth= 4] . ( 2 sec) [ -13147.3737] [ 2845] [depth= 5] . ( 2 sec) [ -12714.3814] [ 2735] [depth= 13] . ( 2 sec) [ -12512.2012] [ 2727] [depth= 1] . ( 2 sec) [ -12329.9821] [ 2727] [depth= 8] . ( 2 sec) [ -12267.7507] [ 2682] [depth= 1] . ( 2 sec) [ -12158.5764] [ 2651] [depth= 6] . ( 2 sec) [ -12089.7457] [ 2653] [depth= 13] . ( 2 sec) [ -11916.9338] [ 2621] [depth= 14] . ( 2 sec) [ -11911.8578] [ 2622] [depth= 1] . ( 2 sec) [ -11901.5161] [ 2613] [depth= 1] . ( 2 sec) [ -11793.0939] [ 2596] [depth= 1] . ( 3 sec) [ -11734.3463] [ 2571] [depth= 2] . ( 3 sec) [ -11670.3131] [ 2558] [depth= 3] . ( 3 sec) [ -11558.8533] [ 2546] [depth= 2] . ( 3 sec) [ -11297.3707] [ 2440] [depth= 7] . ( 3 sec) [ -11111.4519] [ 2390] [depth= 6] . ( 3 sec) [ -10552.5666] [ 2381] [depth= 1] . ( 3 sec) [ -10464.0174] [ 2368] [depth= 2] . ( 3 sec) [ -10394.2615] [ 2342] [depth= 1] . ( 3 sec) [ -10335.9644] [ 2312] [depth= 7] . ( 3 sec) [ -10249.8043] [ 2309] [depth= 2] . ( 3 sec) [ -10198.0503] [ 2325] [depth= 1] . ( 3 sec) [ -10092.3288] [ 2272] [depth= 2] . ( 3 sec) [ -10050.0990] [ 2256] [depth= 3] . ( 3 sec) [ -10044.4480] [ 2240] [depth= 2] . ( 3 sec) [ -10006.0179] [ 2210] [depth= 1] . ( 3 sec) [ -9981.7097] [ 2184] [depth= 2] . ( 3 sec) [ -9907.9081] [ 2176] [depth= 1] . ( 3 sec) [ -9828.4240] [ 2223] [depth= 4] . ( 3 sec) [ -9804.8861] [ 2205] [depth= 3] . ( 3 sec) [ -9653.0263] [ 2145] [depth= 8] . ( 3 sec) [ -9647.3426] [ 2146] [depth= 1] . ( 4 sec) [ -9635.9459] [ 2127] [depth= 5] . ( 4 sec) [ -9623.7071] [ 2117] [depth= 2] . ( 4 sec) [ -9526.6943] [ 2105] [depth= 2] . ( 4 sec) [ -9511.2689] [ 2131] [depth= 1] . ( 4 sec) [ -9509.6434] [ 2129] [depth= 1] . ( 4 sec) [ -9509.1695] [ 2123] [depth= 1] . ( 4 sec) [ -9508.1002] [ 2124] [depth= 1] . ( 4 sec) [ -9481.4522] [ 2121] [depth= 2] . ( 4 sec) [ -9454.6499] [ 2072] [depth= 1] . ( 4 sec) [ -9438.1575] [ 2059] [depth= 1] . ( 4 sec) [ -9431.4522] [ 2060] [depth= 1] . ( 4 sec) [ -9429.3382] [ 2059] [depth= 1] . ( 4 sec) [ -9429.2570] [ 2061] [depth= 1] . ( 4 sec) [ -9405.6464] [ 2063] [depth= 1] . ( 4 sec) [ -9397.7810] [ 2064] [depth= 1] . ( 4 sec) [ -9395.7732] [ 2065] [depth= 1] . ( 4 sec) [ -9275.2183] [ 1950] [depth= 2] . ( 4 sec) [ -9264.6003] [ 1952] [depth= 1] . ( 4 sec) [ -9207.1386] [ 1950] [depth= 1] . ( 5 sec) [ -8945.2816] [ 1868] [depth= 2] . ( 5 sec) [ -8776.7360] [ 1805] [depth= 2] . ( 5 sec) [ -8732.6487] [ 1811] [depth= 4] . ( 5 sec) [ -8731.0438] [ 1807] [depth= 1] . ( 5 sec) [ -8608.5288] [Branch lengths ] . ( 6 sec) [ -8606.4049] [GTR parameters ] . ( 6 sec) [ -8581.4087] [Alpha ][ 0.842157] . ( 6 sec) [ -8577.6714] [ 1799] [depth= 3] . ( 6 sec) [ -8570.4572] [ 1790] [depth= 2] . ( 6 sec) [ -8553.7079] [ 1784] [depth= 1] . ( 6 sec) [ -8549.2856] [ 1790] [depth= 4] . ( 6 sec) [ -8543.0819] [ 1787] [depth= 2] . ( 6 sec) [ -8542.1347] [ 1786] [depth= 1] . ( 6 sec) [ -8528.2529] [ 1759] [depth= 1] . ( 6 sec) [ -8518.3983] [ 1757] [depth= 1] . ( 6 sec) [ -8507.5251] [ 1760] [depth= 1] . ( 7 sec) [ -8505.4907] [ 1761] [depth= 1] . ( 7 sec) [ -8504.4786] [ 1758] [depth= 1] . ( 7 sec) [ -8503.2267] [ 1761] [depth= 2] . ( 7 sec) [ -8461.9413] [ 1734] [depth= 3] . ( 7 sec) [ -8460.8604] [ 1737] [depth= 1] . ( 7 sec) [ -8458.3583] [ 1737] [depth= 1] . ( 7 sec) [ -8449.9484] [ 1730] [depth= 1] . ( 7 sec) [ -8448.2569] [ 1729] [depth= 1] . ( 8 sec) [ -8445.2861] [ 1732] [depth= 1] . ( 8 sec) [ -8443.9889] [ 1731] [depth= 1] . ( 8 sec) [ -8442.4089] [ 1732] [depth= 1] . ( 8 sec) [ -8439.7266] [ 1733] [depth= 1] . ( 8 sec) [ -8439.5999] [ 1733] [depth= 1] . ( 8 sec) [ -8438.9485] [ 1729] [depth= 1] . ( 9 sec) [ -8436.0308] [ 1728] [depth= 1] . ( 9 sec) [ -8416.5507] [Branch lengths ] . ( 9 sec) [ -8416.5382] [GTR parameters ] . ( 9 sec) [ -8415.8835] [Alpha ][ 0.920097] . ( 10 sec) [ -8414.9814] [ 1722] [depth= 1] . ( 10 sec) [ -8414.9341] [ 1721] [depth= 1] . ( 10 sec) [ -8414.6832] [ 1722] [depth= 1] . ( 12 sec) [ -8412.6300] [Branch lengths ] . ( 13 sec) [ -8412.6255] [GTR parameters ] . ( 13 sec) [ -8412.5963] [Alpha ][ 0.937943] . ( 16 sec) [ -8412.4805] [Branch lengths ] . ( 24 sec) [ -8412.2654] [ 1718] [depth= 1] . ( 37 sec) [ -8412.1878] [Branch lengths ] . ( 37 sec) [ -8412.1866] [GTR parameters ] . ( 37 sec) [ -8412.1849] [Alpha ][ 0.942318] . ( 37 sec) [ -8412.1849] [Topology ] . ( 38 sec) [ -8412.1823] [Topology ] . ( 40 sec) [ -8412.1819] [Topology ] . ( 40 sec) [ -8412.1819] [GTR parameters ] . ( 40 sec) [ -8412.1819] [Alpha ][ 0.942318] . ( 40 sec) [ -8412.1819] [Topology ] . ( 41 sec) [ -8412.1818] [Topology ] . ( 41 sec) [ -8412.1818] [GTR parameters ] . ( 41 sec) [ -8412.1818] [Alpha ][ 0.942318] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8412.181800. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -17458.3093] [GTR parameters ] . ( 1 sec) [ -17086.1946] [Alpha ][ 0.500960] . ( 1 sec) [ -16979.2809] [ 3848] [depth= 8] . ( 1 sec) [ -16727.4614] [ 3763] [depth= 8] . ( 1 sec) [ -16394.1809] [ 3708] [depth= 2] . ( 1 sec) [ -16319.2395] [ 3674] [depth= 1] . ( 1 sec) [ -16073.1804] [ 3605] [depth= 6] . ( 1 sec) [ -16034.7159] [ 3592] [depth= 2] . ( 1 sec) [ -15999.4784] [ 3583] [depth= 2] . ( 1 sec) [ -15922.8448] [ 3558] [depth= 1] . ( 1 sec) [ -15876.1390] [ 3548] [depth= 5] . ( 1 sec) [ -15729.7333] [ 3499] [depth= 1] . ( 1 sec) [ -15715.0079] [ 3487] [depth= 5] . ( 2 sec) [ -15145.8453] [ 3406] [depth= 10] . ( 2 sec) [ -15119.8740] [ 3370] [depth= 2] . ( 2 sec) [ -15013.5642] [ 3360] [depth= 3] . ( 2 sec) [ -14948.2205] [ 3335] [depth= 1] . ( 2 sec) [ -14898.3325] [ 3329] [depth= 9] . ( 2 sec) [ -14897.0777] [ 3326] [depth= 2] . ( 2 sec) [ -14797.8931] [ 3327] [depth= 3] . ( 2 sec) [ -14565.4906] [ 3222] [depth= 4] . ( 2 sec) [ -14419.1400] [ 3174] [depth= 11] . ( 2 sec) [ -14356.3536] [ 3171] [depth= 1] . ( 3 sec) [ -13896.2405] [ 3132] [depth= 3] . ( 3 sec) [ -13854.5343] [ 3126] [depth= 1] . ( 3 sec) [ -13793.5113] [ 3132] [depth= 1] . ( 3 sec) [ -13608.5155] [ 3128] [depth= 2] . ( 3 sec) [ -13419.5481] [ 3037] [depth= 12] . ( 3 sec) [ -13360.5994] [ 3014] [depth= 1] . ( 4 sec) [ -13327.5687] [ 3010] [depth= 7] . ( 4 sec) [ -13324.9559] [ 3012] [depth= 1] . ( 4 sec) [ -13107.0261] [ 2980] [depth= 10] . ( 4 sec) [ -13054.1748] [ 2998] [depth= 1] . ( 4 sec) [ -12750.8205] [ 2930] [depth= 3] . ( 4 sec) [ -12574.9939] [ 2889] [depth= 1] . ( 5 sec) [ -12492.4615] [ 2862] [depth= 7] . ( 5 sec) [ -12306.3685] [ 2782] [depth= 8] . ( 5 sec) [ -12294.5102] [ 2780] [depth= 2] . ( 5 sec) [ -12241.7942] [ 2778] [depth= 1] . ( 5 sec) [ -12128.5874] [ 2760] [depth= 6] . ( 5 sec) [ -11776.5981] [ 2591] [depth= 7] . ( 5 sec) [ -11320.5186] [ 2528] [depth= 16] . ( 5 sec) [ -11139.6178] [ 2435] [depth= 8] . ( 5 sec) [ -11100.4863] [ 2428] [depth= 4] . ( 6 sec) [ -11079.2628] [ 2413] [depth= 1] . ( 6 sec) [ -11058.9503] [ 2411] [depth= 1] . ( 6 sec) [ -11045.8188] [ 2407] [depth= 1] . ( 6 sec) [ -11008.3821] [ 2384] [depth= 10] . ( 6 sec) [ -10929.7588] [ 2407] [depth= 1] . ( 6 sec) [ -10902.3172] [ 2384] [depth= 1] . ( 6 sec) [ -10765.5062] [ 2299] [depth= 6] . ( 6 sec) [ -10734.9848] [ 2302] [depth= 4] . ( 6 sec) [ -10447.7008] [ 2218] [depth= 3] . ( 6 sec) [ -10400.5641] [ 2203] [depth= 3] . ( 6 sec) [ -10100.4328] [ 2113] [depth= 4] . ( 6 sec) [ -10059.4217] [ 2108] [depth= 1] . ( 6 sec) [ -9687.7570] [ 2024] [depth= 8] . ( 6 sec) [ -9588.7601] [ 2004] [depth= 3] . ( 6 sec) [ -9586.8007] [ 2006] [depth= 1] . ( 6 sec) [ -9583.1462] [ 1999] [depth= 1] . ( 6 sec) [ -9521.4466] [ 1975] [depth= 2] . ( 6 sec) [ -9516.1390] [ 1970] [depth= 5] . ( 6 sec) [ -9311.5974] [ 1884] [depth= 5] . ( 6 sec) [ -9283.7944] [ 1877] [depth= 1] . ( 6 sec) [ -9230.4760] [ 1866] [depth= 3] . ( 7 sec) [ -9123.7486] [ 1902] [depth= 3] . ( 7 sec) [ -9122.8303] [ 1904] [depth= 1] . ( 7 sec) [ -9120.0820] [ 1902] [depth= 1] . ( 7 sec) [ -9117.7193] [ 1908] [depth= 1] . ( 7 sec) [ -9060.6136] [ 1906] [depth= 1] . ( 7 sec) [ -8919.6160] [ 1848] [depth= 3] . ( 7 sec) [ -8892.5680] [ 1850] [depth= 3] . ( 7 sec) [ -8824.2594] [ 1823] [depth= 1] . ( 7 sec) [ -8817.4756] [ 1820] [depth= 3] . ( 7 sec) [ -8772.7251] [ 1808] [depth= 5] . ( 7 sec) [ -8748.6294] [ 1810] [depth= 2] . ( 7 sec) [ -8748.0631] [ 1827] [depth= 1] . ( 7 sec) [ -8706.6722] [ 1810] [depth= 1] . ( 7 sec) [ -8677.0789] [ 1796] [depth= 1] . ( 7 sec) [ -8665.9600] [ 1789] [depth= 2] . ( 7 sec) [ -8644.0033] [ 1783] [depth= 1] . ( 7 sec) [ -8621.5929] [ 1777] [depth= 3] . ( 8 sec) [ -8542.3611] [Branch lengths ] . ( 8 sec) [ -8540.6463] [GTR parameters ] . ( 8 sec) [ -8518.2793] [Alpha ][ 0.826129] . ( 9 sec) [ -8494.0151] [ 1770] [depth= 1] . ( 9 sec) [ -8482.5309] [ 1758] [depth= 3] . ( 9 sec) [ -8480.2504] [ 1762] [depth= 2] . ( 9 sec) [ -8463.8866] [ 1750] [depth= 2] . ( 9 sec) [ -8459.4035] [ 1742] [depth= 1] . ( 9 sec) [ -8457.8756] [ 1741] [depth= 1] . ( 10 sec) [ -8450.2895] [ 1732] [depth= 2] . ( 10 sec) [ -8448.2615] [ 1737] [depth= 1] . ( 10 sec) [ -8447.6060] [ 1731] [depth= 1] . ( 10 sec) [ -8446.5011] [ 1733] [depth= 1] . ( 10 sec) [ -8444.6175] [ 1729] [depth= 2] . ( 10 sec) [ -8438.5967] [ 1727] [depth= 2] . ( 10 sec) [ -8436.0537] [ 1724] [depth= 1] . ( 10 sec) [ -8428.8748] [ 1725] [depth= 1] . ( 11 sec) [ -8428.4289] [ 1726] [depth= 1] . ( 12 sec) [ -8416.8107] [Branch lengths ] . ( 12 sec) [ -8416.6854] [GTR parameters ] . ( 12 sec) [ -8415.7207] [Alpha ][ 0.920307] . ( 13 sec) [ -8415.6726] [ 1725] [depth= 1] . ( 13 sec) [ -8414.2995] [ 1719] [depth= 1] . ( 16 sec) [ -8412.6394] [Branch lengths ] . ( 16 sec) [ -8412.6328] [GTR parameters ] . ( 16 sec) [ -8412.6106] [Alpha ][ 0.935933] . ( 19 sec) [ -8412.3186] [Branch lengths ] . ( 23 sec) [ -8412.2643] [ 1718] [depth= 1] . ( 41 sec) [ -8412.1965] [Branch lengths ] . ( 41 sec) [ -8412.1955] [GTR parameters ] . ( 41 sec) [ -8412.1924] [Alpha ][ 0.941832] . ( 41 sec) [ -8412.1924] [Topology ] . ( 42 sec) [ -8412.1862] [Topology ] . ( 42 sec) [ -8412.1840] [Topology ] . ( 43 sec) [ -8412.1829] [Topology ] . ( 44 sec) [ -8412.1824] [Topology ] . ( 44 sec) [ -8412.1824] [GTR parameters ] . ( 44 sec) [ -8412.1823] [Alpha ][ 0.942774] . ( 44 sec) [ -8412.1823] [Topology ] . ( 45 sec) [ -8412.1820] [Topology ] . ( 45 sec) [ -8412.1820] [GTR parameters ] . ( 45 sec) [ -8412.1820] [Alpha ][ 0.942774] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8412.182046. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18654.9110] [GTR parameters ] . ( 1 sec) [ -18231.3910] [Alpha ][ 0.500960] . ( 1 sec) [ -18118.7666] [ 3998] [depth= 6] . ( 1 sec) [ -18099.1927] [ 4003] [depth= 1] . ( 1 sec) [ -17855.4269] [ 3910] [depth= 11] . ( 1 sec) [ -17812.8605] [ 3903] [depth= 3] . ( 1 sec) [ -17782.1760] [ 3902] [depth= 1] . ( 1 sec) [ -17713.7756] [ 3868] [depth= 2] . ( 1 sec) [ -17458.2765] [ 3876] [depth= 6] . ( 1 sec) [ -17108.3428] [ 3859] [depth= 5] . ( 1 sec) [ -17048.8946] [ 3859] [depth= 1] . ( 1 sec) [ -16749.1481] [ 3729] [depth= 8] . ( 1 sec) [ -16432.0366] [ 3676] [depth= 5] . ( 1 sec) [ -16418.8752] [ 3661] [depth= 1] . ( 1 sec) [ -16174.8589] [ 3612] [depth= 17] . ( 2 sec) [ -15864.8486] [ 3535] [depth= 11] . ( 2 sec) [ -15344.9948] [ 3540] [depth= 1] . ( 2 sec) [ -15334.6218] [ 3521] [depth= 4] . ( 2 sec) [ -15249.3052] [ 3541] [depth= 1] . ( 2 sec) [ -14889.3723] [ 3507] [depth= 8] . ( 2 sec) [ -14804.7716] [ 3488] [depth= 2] . ( 2 sec) [ -14582.6892] [ 3464] [depth= 6] . ( 2 sec) [ -14571.3198] [ 3455] [depth= 1] . ( 2 sec) [ -14484.5669] [ 3432] [depth= 12] . ( 2 sec) [ -14360.8325] [ 3391] [depth= 3] . ( 2 sec) [ -14197.8540] [ 3349] [depth= 5] . ( 2 sec) [ -14056.0148] [ 3257] [depth= 4] . ( 2 sec) [ -13765.4648] [ 3251] [depth= 1] . ( 2 sec) [ -13660.5268] [ 3240] [depth= 11] . ( 2 sec) [ -13469.6773] [ 3141] [depth= 3] . ( 2 sec) [ -13374.3345] [ 3134] [depth= 9] . ( 2 sec) [ -13370.0160] [ 3135] [depth= 1] . ( 2 sec) [ -13256.1416] [ 3077] [depth= 1] . ( 2 sec) [ -13137.4175] [ 3038] [depth= 8] . ( 2 sec) [ -12985.2336] [ 2993] [depth= 3] . ( 2 sec) [ -12874.2454] [ 3002] [depth= 1] . ( 2 sec) [ -12632.9346] [ 2942] [depth= 8] . ( 2 sec) [ -12613.0523] [ 2931] [depth= 1] . ( 3 sec) [ -12549.6214] [ 2905] [depth= 1] . ( 3 sec) [ -12348.0297] [ 2833] [depth= 10] . ( 3 sec) [ -12245.2230] [ 2809] [depth= 12] . ( 3 sec) [ -12238.0109] [ 2810] [depth= 1] . ( 3 sec) [ -12214.0660] [ 2804] [depth= 2] . ( 3 sec) [ -12183.7671] [ 2809] [depth= 1] . ( 3 sec) [ -12180.8466] [ 2792] [depth= 1] . ( 3 sec) [ -11828.7828] [ 2780] [depth= 5] . ( 3 sec) [ -11788.3197] [ 2772] [depth= 2] . ( 3 sec) [ -11709.6930] [ 2718] [depth= 6] . ( 3 sec) [ -11581.0194] [ 2638] [depth= 6] . ( 3 sec) [ -11397.6528] [ 2597] [depth= 4] . ( 3 sec) [ -11382.0552] [ 2565] [depth= 1] . ( 3 sec) [ -11311.7469] [ 2509] [depth= 9] . ( 3 sec) [ -11174.2781] [ 2452] [depth= 3] . ( 3 sec) [ -10954.8188] [ 2359] [depth= 8] . ( 3 sec) [ -10709.6743] [ 2259] [depth= 4] . ( 3 sec) [ -10629.5722] [ 2249] [depth= 1] . ( 3 sec) [ -10546.5787] [ 2184] [depth= 3] . ( 3 sec) [ -10013.5738] [ 2161] [depth= 2] . ( 3 sec) [ -9827.2903] [ 2135] [depth= 4] . ( 3 sec) [ -9655.0592] [ 2094] [depth= 1] . ( 3 sec) [ -9649.8625] [ 2094] [depth= 1] . ( 4 sec) [ -9564.3251] [ 2088] [depth= 2] . ( 4 sec) [ -9536.5493] [ 2091] [depth= 1] . ( 4 sec) [ -9528.5213] [ 2088] [depth= 1] . ( 4 sec) [ -9364.2938] [ 1988] [depth= 9] . ( 4 sec) [ -9232.4056] [ 1957] [depth= 5] . ( 4 sec) [ -9141.3727] [ 1910] [depth= 1] . ( 4 sec) [ -9080.6115] [ 1898] [depth= 3] . ( 4 sec) [ -9060.8322] [ 1892] [depth= 1] . ( 4 sec) [ -8938.8721] [ 1845] [depth= 3] . ( 4 sec) [ -8894.6457] [ 1822] [depth= 3] . ( 4 sec) [ -8813.1746] [ 1812] [depth= 1] . ( 4 sec) [ -8724.7012] [ 1794] [depth= 1] . ( 4 sec) [ -8656.5149] [ 1756] [depth= 1] . ( 4 sec) [ -8648.6954] [ 1757] [depth= 1] . ( 5 sec) [ -8642.0264] [ 1764] [depth= 1] . ( 5 sec) [ -8629.2722] [ 1767] [depth= 1] . ( 5 sec) [ -8628.0674] [ 1772] [depth= 1] . ( 5 sec) [ -8625.6934] [ 1771] [depth= 1] . ( 5 sec) [ -8603.4742] [ 1747] [depth= 1] . ( 5 sec) [ -8600.2354] [ 1744] [depth= 1] . ( 5 sec) [ -8500.8995] [Branch lengths ] . ( 5 sec) [ -8499.0569] [GTR parameters ] . ( 6 sec) [ -8470.1029] [Alpha ][ 0.886919] . ( 6 sec) [ -8454.8008] [ 1732] [depth= 2] . ( 6 sec) [ -8444.6398] [ 1724] [depth= 1] . ( 6 sec) [ -8442.3302] [ 1727] [depth= 1] . ( 6 sec) [ -8440.1868] [ 1724] [depth= 1] . ( 6 sec) [ -8440.1483] [ 1726] [depth= 1] . ( 7 sec) [ -8440.0313] [ 1724] [depth= 1] . ( 7 sec) [ -8439.2660] [ 1718] [depth= 1] . ( 7 sec) [ -8438.6159] [ 1722] [depth= 1] . ( 9 sec) [ -8424.4692] [Branch lengths ] . ( 9 sec) [ -8424.4428] [GTR parameters ] . ( 9 sec) [ -8424.2425] [Alpha ][ 0.931692] . ( 12 sec) [ -8423.7824] [Branch lengths ] . ( 25 sec) [ -8423.5431] [ 1718] [depth= 1] . ( 35 sec) [ -8423.4685] [Branch lengths ] . ( 36 sec) [ -8423.4669] [GTR parameters ] . ( 36 sec) [ -8423.4601] [Alpha ][ 0.940273] . ( 36 sec) [ -8423.4601] [Topology ] . ( 37 sec) [ -8423.4373] [Topology ] . ( 38 sec) [ -8423.2960] [Topology ] . ( 38 sec) [ -8422.4020] [Topology ] . ( 40 sec) [ -8418.8463] [Topology ] . ( 41 sec) [ -8413.1618] [Topology ] . ( 42 sec) [ -8412.3460] [Topology ] . ( 42 sec) [ -8412.3374] [GTR parameters ] . ( 43 sec) [ -8412.3369] [Alpha ][ 0.942383] . ( 43 sec) [ -8412.3369] [Topology ] . ( 43 sec) [ -8412.2166] [Topology ] . ( 45 sec) [ -8412.1902] [Topology ] . ( 46 sec) [ -8412.1839] [Topology ] . ( 47 sec) [ -8412.1823] [Topology ] . ( 48 sec) [ -8412.1819] [Topology ] . ( 48 sec) [ -8412.1819] [GTR parameters ] . ( 48 sec) [ -8412.1819] [Alpha ][ 0.942383] . ( 48 sec) [ -8412.1819] [Topology ] . ( 50 sec) [ -8412.1818] [Topology ] . ( 50 sec) [ -8412.1818] [GTR parameters ] . ( 50 sec) [ -8412.1818] [Alpha ][ 0.942383] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8412.181813. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-8457.231258 . ( 1 sec) [ -8451.4738] [GTR parameters ] . ( 1 sec) [ -8450.4220] [Alpha ][ 0.890232] . ( 1 sec) [ -8450.4220] [Topology ] . ( 2 sec) [ -8419.1973] [Topology ] . ( 2 sec) [ -8414.2934] [Topology ] . ( 3 sec) [ -8413.2941] [Topology ] . ( 4 sec) [ -8412.8931] [Topology ] . ( 5 sec) [ -8412.7066] [Topology ] . ( 5 sec) [ -8412.6141] [Topology ] . ( 6 sec) [ -8412.5670] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-8412.566967 . ( 11 sec) [ -8412.5049] [GTR parameters ] . ( 12 sec) [ -8412.2671] [Alpha ][ 0.939211] . ( 12 sec) [ -8412.2671] [Topology ] . ( 12 sec) [ -8412.2237] [Topology ] . ( 13 sec) [ -8412.2037] [Topology ] . ( 14 sec) [ -8412.1936] [Topology ] . ( 15 sec) [ -8412.1885] [Topology ] . ( 15 sec) [ -8412.1858] [Topology ] . ( 16 sec) [ -8412.1844] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-8412.184397 . ( 21 sec) [ -8412.1844] [GTR parameters ] . ( 21 sec) [ -8412.1835] [Alpha ][ 0.942233] . ( 21 sec) [ -8412.1835] [Topology ] . ( 22 sec) [ -8412.1826] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-8412.182644 . ( 27 sec) [ -8412.1826] [GTR parameters ] . ( 27 sec) [ -8412.1826] [Alpha ][ 0.942233] . ( 27 sec) [ -8412.1826] [Topology ] . ( 28 sec) [ -8412.1822] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 38 sec) [ -8451.4738] [GTR parameters ] . ( 38 sec) [ -8450.4220] [Alpha ][ 0.890232] . ( 39 sec) [ -8450.2996] [ 1724] [depth= 1] . ( 39 sec) [ -8450.0608] [ 1725] [depth= 1] . ( 39 sec) [ -8449.6502] [ 1724] [depth= 1] . ( 39 sec) [ -8449.1991] [ 1726] [depth= 1] . ( 39 sec) [ -8448.3430] [ 1729] [depth= 1] . ( 40 sec) [ -8447.9667] [ 1734] [depth= 1] . ( 40 sec) [ -8439.5611] [ 1735] [depth= 1] . ( 40 sec) [ -8439.4611] [ 1734] [depth= 1] . ( 40 sec) [ -8438.6771] [ 1729] [depth= 1] . ( 40 sec) [ -8438.3392] [ 1728] [depth= 1] . ( 41 sec) [ -8436.0651] [ 1729] [depth= 1] . ( 41 sec) [ -8415.4866] [Branch lengths ] . ( 42 sec) [ -8415.4408] [GTR parameters ] . ( 42 sec) [ -8415.3094] [Alpha ][ 0.926795] . ( 43 sec) [ -8415.2778] [ 1728] [depth= 1] . ( 43 sec) [ -8415.1816] [ 1727] [depth= 1] . ( 43 sec) [ -8414.6653] [ 1722] [depth= 1] . ( 45 sec) [ -8412.7777] [Branch lengths ] . ( 45 sec) [ -8412.7730] [GTR parameters ] . ( 45 sec) [ -8412.7603] [Alpha ][ 0.938628] . ( 49 sec) [ -8412.5805] [Branch lengths ] . ( 53 sec) [ -8412.5329] [ 1722] [depth= 1] . ( 55 sec) [ -8412.3178] [ 1718] [depth= 1] . ( 71 sec) [ -8412.1963] [Branch lengths ] . ( 71 sec) [ -8412.1935] [GTR parameters ] . ( 71 sec) [ -8412.1922] [Alpha ][ 0.942378] . ( 71 sec) [ -8412.1922] [Topology ] . ( 72 sec) [ -8412.1851] [Topology ] . ( 72 sec) [ -8412.1834] [Topology ] . ( 73 sec) [ -8412.1826] [Topology ] . ( 73 sec) [ -8412.1826] [GTR parameters ] . ( 73 sec) [ -8412.1826] [Alpha ][ 0.942378] . ( 73 sec) [ -8412.1826] [Topology ] . ( 74 sec) [ -8412.1821] [Topology ] . ( 74 sec) [ -8412.1821] [GTR parameters ] . ( 74 sec) [ -8412.1821] [Alpha ][ 0.942378] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -8412.182208 . Log likelihood obtained after SPR moves : -8412.182128 . Log likelihood of the current tree: -8412.182128. . Printing the most likely tree in file 'data51.phy_phyml_tree.txt'... . Best log likelihood : -8412.181800 . Time used 0h1m20s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo