.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data55.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 368 patterns found. (out of a total of 500 sites) . 121 sites without polymorphism (24.20%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16622.3861] [GTR parameters ] . ( 1 sec) [ -16247.5391] [Alpha ][ 0.500960] . ( 1 sec) [ -15772.9410] [ 3025] [depth= 8] . ( 1 sec) [ -15759.1462] [ 3024] [depth= 8] . ( 1 sec) [ -15394.2844] [ 3014] [depth= 2] . ( 1 sec) [ -15214.4521] [ 3009] [depth= 6] . ( 1 sec) [ -15179.1116] [ 2986] [depth= 3] . ( 1 sec) [ -14902.5585] [ 2979] [depth= 7] . ( 1 sec) [ -14665.8238] [ 2965] [depth= 11] . ( 1 sec) [ -14503.5375] [ 2958] [depth= 1] . ( 1 sec) [ -14340.9390] [ 2903] [depth= 18] . ( 1 sec) [ -14140.3141] [ 2799] [depth= 16] . ( 1 sec) [ -13840.5788] [ 2782] [depth= 7] . ( 1 sec) [ -13684.3797] [ 2775] [depth= 2] . ( 1 sec) [ -13631.7393] [ 2774] [depth= 3] . ( 1 sec) [ -13579.2054] [ 2769] [depth= 2] . ( 1 sec) [ -13053.5741] [ 2675] [depth= 5] . ( 1 sec) [ -13029.4571] [ 2671] [depth= 4] . ( 2 sec) [ -12645.3442] [ 2620] [depth= 10] . ( 2 sec) [ -12544.0080] [ 2626] [depth= 1] . ( 2 sec) [ -12376.2488] [ 2586] [depth= 4] . ( 2 sec) [ -12289.1960] [ 2576] [depth= 1] . ( 2 sec) [ -11980.9947] [ 2545] [depth= 12] . ( 2 sec) [ -11684.5848] [ 2451] [depth= 5] . ( 2 sec) [ -11533.5798] [ 2432] [depth= 10] . ( 2 sec) [ -11130.7284] [ 2363] [depth= 17] . ( 2 sec) [ -10962.9316] [ 2361] [depth= 9] . ( 2 sec) [ -10791.1328] [ 2319] [depth= 8] . ( 2 sec) [ -10762.6441] [ 2319] [depth= 2] . ( 2 sec) [ -10675.6159] [ 2315] [depth= 2] . ( 2 sec) [ -10491.3082] [ 2296] [depth= 4] . ( 2 sec) [ -10432.0426] [ 2295] [depth= 1] . ( 2 sec) [ -10258.0921] [ 2256] [depth= 3] . ( 2 sec) [ -10043.9130] [ 2183] [depth= 8] . ( 2 sec) [ -9856.9475] [ 2131] [depth= 4] . ( 2 sec) [ -9690.7381] [ 2127] [depth= 1] . ( 2 sec) [ -9392.3040] [ 2049] [depth= 6] . ( 2 sec) [ -9337.2306] [ 2012] [depth= 11] . ( 2 sec) [ -9272.2868] [ 1999] [depth= 2] . ( 2 sec) [ -9259.1704] [ 1997] [depth= 1] . ( 2 sec) [ -9245.1977] [ 2001] [depth= 1] . ( 2 sec) [ -9171.6220] [ 1924] [depth= 5] . ( 2 sec) [ -8612.7712] [ 1796] [depth= 3] . ( 2 sec) [ -8612.4966] [ 1792] [depth= 2] . ( 3 sec) [ -8540.7310] [ 1780] [depth= 5] . ( 3 sec) [ -8540.3746] [ 1784] [depth= 2] . ( 3 sec) [ -8538.0342] [ 1787] [depth= 1] . ( 3 sec) [ -8424.0710] [ 1756] [depth= 1] . ( 3 sec) [ -8404.3468] [ 1752] [depth= 1] . ( 3 sec) [ -8119.2491] [ 1662] [depth= 3] . ( 3 sec) [ -8111.4934] [ 1659] [depth= 2] . ( 3 sec) [ -8105.0190] [ 1660] [depth= 4] . ( 3 sec) [ -8069.7028] [ 1657] [depth= 1] . ( 3 sec) [ -8069.1300] [ 1618] [depth= 3] . ( 3 sec) [ -7915.6160] [ 1551] [depth= 5] . ( 3 sec) [ -7838.9202] [ 1550] [depth= 1] . ( 3 sec) [ -7812.9915] [ 1549] [depth= 1] . ( 3 sec) [ -7764.9137] [ 1531] [depth= 1] . ( 3 sec) [ -7721.1596] [ 1522] [depth= 4] . ( 3 sec) [ -7715.6107] [ 1522] [depth= 4] . ( 3 sec) [ -7636.8876] [ 1500] [depth= 1] . ( 3 sec) [ -7606.8945] [ 1452] [depth= 3] . ( 3 sec) [ -7587.2686] [ 1453] [depth= 1] . ( 4 sec) [ -7507.2578] [ 1453] [depth= 5] . ( 4 sec) [ -7506.6234] [ 1454] [depth= 1] . ( 4 sec) [ -7498.1682] [ 1454] [depth= 2] . ( 4 sec) [ -7496.8911] [ 1456] [depth= 1] . ( 4 sec) [ -7477.7196] [ 1460] [depth= 1] . ( 4 sec) [ -7464.3130] [ 1447] [depth= 2] . ( 4 sec) [ -7423.1203] [ 1446] [depth= 2] . ( 4 sec) [ -7374.1803] [ 1430] [depth= 1] . ( 4 sec) [ -7327.6696] [ 1427] [depth= 1] . ( 4 sec) [ -7155.0740] [ 1429] [depth= 2] . ( 4 sec) [ -7039.9205] [ 1367] [depth= 6] . ( 4 sec) [ -6834.1294] [ 1304] [depth= 2] . ( 4 sec) [ -6817.9791] [ 1308] [depth= 1] . ( 4 sec) [ -6784.1282] [ 1290] [depth= 2] . ( 4 sec) [ -6748.3145] [ 1280] [depth= 1] . ( 4 sec) [ -6636.7869] [ 1237] [depth= 1] . ( 5 sec) [ -6493.1048] [Branch lengths ] . ( 5 sec) [ -6484.4804] [GTR parameters ] . ( 5 sec) [ -6450.6432] [Alpha ][ 1.000107] . ( 5 sec) [ -6447.0685] [ 1234] [depth= 2] . ( 5 sec) [ -6434.4618] [ 1216] [depth= 1] . ( 6 sec) [ -6430.4415] [ 1213] [depth= 1] . ( 6 sec) [ -6426.6502] [ 1211] [depth= 1] . ( 6 sec) [ -6405.6139] [ 1204] [depth= 1] . ( 6 sec) [ -6405.0338] [ 1215] [depth= 1] . ( 6 sec) [ -6404.8432] [ 1218] [depth= 2] . ( 6 sec) [ -6387.4663] [ 1206] [depth= 4] . ( 6 sec) [ -6386.8968] [ 1204] [depth= 1] . ( 7 sec) [ -6386.6520] [ 1206] [depth= 1] . ( 7 sec) [ -6386.2989] [ 1207] [depth= 1] . ( 7 sec) [ -6385.9314] [ 1206] [depth= 1] . ( 8 sec) [ -6384.3371] [ 1198] [depth= 1] . ( 8 sec) [ -6381.3723] [ 1197] [depth= 1] . ( 8 sec) [ -6381.1300] [ 1198] [depth= 1] . ( 9 sec) [ -6374.3370] [Branch lengths ] . ( 9 sec) [ -6374.1631] [GTR parameters ] . ( 9 sec) [ -6373.6334] [Alpha ][ 1.104085] . ( 12 sec) [ -6373.6012] [ 1197] [depth= 1] . ( 13 sec) [ -6372.0403] [Branch lengths ] . ( 13 sec) [ -6372.0373] [GTR parameters ] . ( 13 sec) [ -6372.0306] [Alpha ][ 1.116957] . ( 17 sec) [ -6371.5283] [Branch lengths ] . ( 36 sec) [ -6371.5231] [Branch lengths ] . ( 36 sec) [ -6371.5231] [Topology ] . ( 36 sec) [ -6371.5230] [Topology ] . ( 37 sec) [ -6371.5225] [GTR parameters ] . ( 37 sec) [ -6371.5223] [Alpha ][ 1.118726] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6371.522328. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16977.0726] [GTR parameters ] . ( 1 sec) [ -16582.9887] [Alpha ][ 0.500960] . ( 1 sec) [ -15638.6311] [ 3181] [depth= 3] . ( 1 sec) [ -15261.4113] [ 3125] [depth= 10] . ( 1 sec) [ -15142.8466] [ 3098] [depth= 1] . ( 1 sec) [ -15017.0180] [ 3092] [depth= 7] . ( 1 sec) [ -14750.4864] [ 3012] [depth= 1] . ( 2 sec) [ -14649.3614] [ 3007] [depth= 1] . ( 2 sec) [ -14566.3988] [ 3003] [depth= 4] . ( 2 sec) [ -14379.6045] [ 2936] [depth= 2] . ( 2 sec) [ -14339.3619] [ 2934] [depth= 4] . ( 2 sec) [ -14137.1334] [ 2870] [depth= 3] . ( 2 sec) [ -14104.6673] [ 2867] [depth= 3] . ( 2 sec) [ -13935.3715] [ 2844] [depth= 11] . ( 2 sec) [ -13507.9418] [ 2845] [depth= 4] . ( 2 sec) [ -12963.2702] [ 2736] [depth= 10] . ( 2 sec) [ -12640.6353] [ 2725] [depth= 4] . ( 2 sec) [ -12456.4671] [ 2705] [depth= 11] . ( 2 sec) [ -12101.9010] [ 2611] [depth= 1] . ( 2 sec) [ -12052.9451] [ 2610] [depth= 1] . ( 2 sec) [ -11754.4722] [ 2471] [depth= 2] . ( 2 sec) [ -11728.4172] [ 2468] [depth= 1] . ( 2 sec) [ -11716.5650] [ 2464] [depth= 1] . ( 2 sec) [ -11709.6298] [ 2465] [depth= 2] . ( 2 sec) [ -11582.7937] [ 2443] [depth= 15] . ( 2 sec) [ -11200.7750] [ 2315] [depth= 16] . ( 2 sec) [ -11182.8348] [ 2312] [depth= 1] . ( 2 sec) [ -11023.1319] [ 2303] [depth= 12] . ( 2 sec) [ -10969.0750] [ 2282] [depth= 1] . ( 2 sec) [ -10962.0678] [ 2277] [depth= 1] . ( 2 sec) [ -10878.0775] [ 2255] [depth= 12] . ( 2 sec) [ -10589.9226] [ 2118] [depth= 12] . ( 3 sec) [ -10484.1406] [ 2092] [depth= 1] . ( 3 sec) [ -10322.7523] [ 2057] [depth= 2] . ( 3 sec) [ -10195.3937] [ 2055] [depth= 1] . ( 3 sec) [ -10164.7772] [ 2051] [depth= 2] . ( 3 sec) [ -10085.5864] [ 2041] [depth= 9] . ( 3 sec) [ -10065.4953] [ 2036] [depth= 1] . ( 3 sec) [ -10006.5032] [ 1993] [depth= 7] . ( 3 sec) [ -9783.5431] [ 2009] [depth= 1] . ( 3 sec) [ -9737.7976] [ 1952] [depth= 6] . ( 3 sec) [ -8880.7822] [ 1942] [depth= 9] . ( 3 sec) [ -8844.0825] [ 1919] [depth= 7] . ( 3 sec) [ -8837.8337] [ 1916] [depth= 1] . ( 3 sec) [ -8733.9644] [ 1867] [depth= 2] . ( 3 sec) [ -8607.6775] [ 1836] [depth= 1] . ( 3 sec) [ -8461.9442] [ 1802] [depth= 8] . ( 3 sec) [ -8436.5120] [ 1782] [depth= 4] . ( 3 sec) [ -8321.9199] [ 1699] [depth= 3] . ( 3 sec) [ -8306.8429] [ 1698] [depth= 1] . ( 3 sec) [ -8286.2083] [ 1689] [depth= 2] . ( 3 sec) [ -8280.4345] [ 1699] [depth= 1] . ( 3 sec) [ -8212.9433] [ 1689] [depth= 1] . ( 4 sec) [ -7885.9877] [ 1637] [depth= 2] . ( 4 sec) [ -7810.3575] [ 1624] [depth= 2] . ( 4 sec) [ -7772.1317] [ 1615] [depth= 1] . ( 4 sec) [ -7768.8962] [ 1614] [depth= 1] . ( 4 sec) [ -7730.9242] [ 1578] [depth= 1] . ( 4 sec) [ -7729.2870] [ 1580] [depth= 3] . ( 4 sec) [ -7595.3184] [ 1537] [depth= 2] . ( 4 sec) [ -7498.3825] [ 1476] [depth= 6] . ( 4 sec) [ -7487.8428] [ 1479] [depth= 1] . ( 4 sec) [ -7486.8204] [ 1476] [depth= 1] . ( 4 sec) [ -7447.1550] [ 1478] [depth= 1] . ( 4 sec) [ -7374.9846] [ 1462] [depth= 4] . ( 4 sec) [ -7315.5057] [ 1456] [depth= 2] . ( 4 sec) [ -7312.9300] [ 1460] [depth= 2] . ( 4 sec) [ -7288.2027] [ 1450] [depth= 1] . ( 4 sec) [ -7260.9859] [ 1390] [depth= 5] . ( 4 sec) [ -7126.2009] [ 1388] [depth= 1] . ( 4 sec) [ -7106.2592] [ 1379] [depth= 1] . ( 4 sec) [ -7095.5124] [ 1377] [depth= 1] . ( 4 sec) [ -7085.8995] [ 1377] [depth= 2] . ( 4 sec) [ -7084.8863] [ 1379] [depth= 1] . ( 5 sec) [ -6839.2169] [ 1320] [depth= 7] . ( 5 sec) [ -6623.5061] [ 1288] [depth= 7] . ( 5 sec) [ -6564.2994] [ 1257] [depth= 2] . ( 5 sec) [ -6553.6336] [ 1244] [depth= 2] . ( 5 sec) [ -6553.3917] [ 1246] [depth= 1] . ( 5 sec) [ -6552.6890] [ 1246] [depth= 1] . ( 5 sec) [ -6501.6097] [Branch lengths ] . ( 6 sec) [ -6493.8759] [GTR parameters ] . ( 6 sec) [ -6466.4016] [Alpha ][ 0.970638] . ( 6 sec) [ -6461.0912] [ 1243] [depth= 1] . ( 6 sec) [ -6449.0579] [ 1237] [depth= 1] . ( 6 sec) [ -6448.4716] [ 1239] [depth= 1] . ( 6 sec) [ -6435.7931] [ 1232] [depth= 2] . ( 6 sec) [ -6404.4483] [ 1220] [depth= 1] . ( 6 sec) [ -6402.4303] [ 1218] [depth= 1] . ( 6 sec) [ -6402.3644] [ 1216] [depth= 1] . ( 6 sec) [ -6402.2068] [ 1218] [depth= 1] . ( 7 sec) [ -6385.1361] [ 1199] [depth= 2] . ( 7 sec) [ -6384.9299] [ 1198] [depth= 2] . ( 8 sec) [ -6383.2958] [ 1203] [depth= 1] . ( 8 sec) [ -6383.0291] [ 1199] [depth= 1] . ( 9 sec) [ -6382.6308] [ 1197] [depth= 1] . ( 9 sec) [ -6374.1458] [Branch lengths ] . ( 10 sec) [ -6374.0580] [GTR parameters ] . ( 10 sec) [ -6373.2224] [Alpha ][ 1.100402] . ( 11 sec) [ -6373.1967] [ 1201] [depth= 1] . ( 12 sec) [ -6373.0684] [ 1197] [depth= 1] . ( 13 sec) [ -6372.5835] [Branch lengths ] . ( 13 sec) [ -6372.5827] [GTR parameters ] . ( 13 sec) [ -6372.5757] [Alpha ][ 1.113533] . ( 32 sec) [ -6372.5076] [Branch lengths ] . ( 32 sec) [ -6372.5076] [Topology ] . ( 33 sec) [ -6371.7192] [Topology ] . ( 34 sec) [ -6371.6459] [Topology ] . ( 35 sec) [ -6371.6346] [Topology ] . ( 35 sec) [ -6371.6314] [Topology ] . ( 36 sec) [ -6371.6304] [Topology ] . ( 37 sec) [ -6371.6301] [Topology ] . ( 37 sec) [ -6371.6229] [GTR parameters ] . ( 37 sec) [ -6371.6192] [Alpha ][ 1.123128] . ( 37 sec) [ -6371.6192] [Topology ] . ( 38 sec) [ -6371.6189] [Topology ] . ( 38 sec) [ -6371.6189] [GTR parameters ] . ( 38 sec) [ -6371.6189] [Alpha ][ 1.123128] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6371.618861. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -16097.4765] [GTR parameters ] . ( 1 sec) [ -15722.7078] [Alpha ][ 0.500960] . ( 1 sec) [ -15464.5213] [ 3192] [depth= 8] . ( 1 sec) [ -15008.5313] [ 3169] [depth= 8] . ( 1 sec) [ -14931.8458] [ 3161] [depth= 2] . ( 1 sec) [ -14852.0679] [ 3161] [depth= 3] . ( 1 sec) [ -14662.7340] [ 3116] [depth= 7] . ( 1 sec) [ -14493.7579] [ 3113] [depth= 3] . ( 1 sec) [ -14105.5261] [ 3077] [depth= 10] . ( 1 sec) [ -13767.0536] [ 3069] [depth= 1] . ( 1 sec) [ -13654.9113] [ 2978] [depth= 1] . ( 1 sec) [ -13325.1790] [ 2914] [depth= 6] . ( 1 sec) [ -12843.4566] [ 2842] [depth= 7] . ( 1 sec) [ -12384.3535] [ 2815] [depth= 17] . ( 1 sec) [ -12313.5644] [ 2750] [depth= 1] . ( 1 sec) [ -12174.5406] [ 2748] [depth= 1] . ( 1 sec) [ -11734.6134] [ 2681] [depth= 13] . ( 1 sec) [ -11595.9059] [ 2697] [depth= 1] . ( 1 sec) [ -11410.6901] [ 2670] [depth= 14] . ( 1 sec) [ -11395.7455] [ 2669] [depth= 1] . ( 1 sec) [ -11320.0286] [ 2648] [depth= 9] . ( 1 sec) [ -11131.4235] [ 2620] [depth= 5] . ( 1 sec) [ -11057.3477] [ 2574] [depth= 8] . ( 1 sec) [ -10883.2886] [ 2491] [depth= 7] . ( 1 sec) [ -10735.5196] [ 2365] [depth= 13] . ( 1 sec) [ -10718.3007] [ 2378] [depth= 1] . ( 2 sec) [ -10486.6848] [ 2357] [depth= 7] . ( 2 sec) [ -10309.7170] [ 2363] [depth= 1] . ( 2 sec) [ -10245.4509] [ 2341] [depth= 1] . ( 2 sec) [ -9975.4268] [ 2178] [depth= 13] . ( 2 sec) [ -9953.6731] [ 2183] [depth= 1] . ( 2 sec) [ -9935.2748] [ 2174] [depth= 2] . ( 2 sec) [ -9862.4746] [ 2127] [depth= 9] . ( 2 sec) [ -9701.5876] [ 2099] [depth= 5] . ( 2 sec) [ -9693.7226] [ 2089] [depth= 1] . ( 2 sec) [ -9683.5242] [ 2059] [depth= 1] . ( 2 sec) [ -9667.2102] [ 2054] [depth= 2] . ( 2 sec) [ -9632.9776] [ 2052] [depth= 1] . ( 2 sec) [ -9625.5750] [ 2058] [depth= 1] . ( 2 sec) [ -9506.3285] [ 2012] [depth= 3] . ( 2 sec) [ -9502.2629] [ 2009] [depth= 1] . ( 2 sec) [ -9497.1469] [ 1987] [depth= 3] . ( 2 sec) [ -9496.6227] [ 1989] [depth= 1] . ( 2 sec) [ -9291.4887] [ 1931] [depth= 7] . ( 2 sec) [ -9183.2631] [ 1953] [depth= 9] . ( 2 sec) [ -9182.8962] [ 1955] [depth= 1] . ( 2 sec) [ -9018.4701] [ 1905] [depth= 6] . ( 2 sec) [ -9011.1771] [ 1901] [depth= 1] . ( 2 sec) [ -8988.1159] [ 1900] [depth= 3] . ( 2 sec) [ -8832.5696] [ 1861] [depth= 2] . ( 3 sec) [ -8827.5724] [ 1857] [depth= 2] . ( 3 sec) [ -8477.6558] [ 1796] [depth= 10] . ( 3 sec) [ -8319.8714] [ 1699] [depth= 12] . ( 3 sec) [ -8173.5638] [ 1693] [depth= 3] . ( 3 sec) [ -8155.7288] [ 1690] [depth= 2] . ( 3 sec) [ -8103.2087] [ 1685] [depth= 2] . ( 3 sec) [ -8055.2525] [ 1660] [depth= 1] . ( 3 sec) [ -7701.3971] [ 1524] [depth= 9] . ( 3 sec) [ -7690.2082] [ 1526] [depth= 1] . ( 3 sec) [ -7596.0980] [ 1506] [depth= 3] . ( 3 sec) [ -7457.8684] [ 1485] [depth= 3] . ( 3 sec) [ -7448.6991] [ 1485] [depth= 1] . ( 3 sec) [ -7447.2801] [ 1485] [depth= 1] . ( 3 sec) [ -7351.3215] [ 1472] [depth= 6] . ( 3 sec) [ -7329.3881] [ 1465] [depth= 4] . ( 3 sec) [ -7210.0497] [ 1409] [depth= 6] . ( 3 sec) [ -7198.8840] [ 1404] [depth= 1] . ( 3 sec) [ -7164.2173] [ 1383] [depth= 1] . ( 3 sec) [ -7083.2718] [ 1376] [depth= 1] . ( 3 sec) [ -7045.7454] [ 1376] [depth= 2] . ( 3 sec) [ -6992.1579] [ 1361] [depth= 2] . ( 3 sec) [ -6913.0045] [ 1351] [depth= 1] . ( 4 sec) [ -6910.1338] [ 1349] [depth= 1] . ( 4 sec) [ -6908.2614] [ 1348] [depth= 1] . ( 4 sec) [ -6832.9266] [ 1341] [depth= 7] . ( 4 sec) [ -6812.8054] [ 1338] [depth= 1] . ( 4 sec) [ -6810.6935] [ 1337] [depth= 2] . ( 4 sec) [ -6738.8638] [ 1294] [depth= 2] . ( 4 sec) [ -6643.9088] [ 1258] [depth= 1] . ( 4 sec) [ -6627.6432] [ 1257] [depth= 1] . ( 4 sec) [ -6624.3889] [ 1254] [depth= 2] . ( 4 sec) [ -6589.2786] [ 1244] [depth= 1] . ( 4 sec) [ -6588.2831] [ 1243] [depth= 1] . ( 4 sec) [ -6588.1922] [ 1247] [depth= 1] . ( 4 sec) [ -6586.6644] [ 1245] [depth= 1] . ( 4 sec) [ -6586.6378] [ 1249] [depth= 1] . ( 4 sec) [ -6534.3190] [Branch lengths ] . ( 5 sec) [ -6525.3603] [GTR parameters ] . ( 5 sec) [ -6493.8908] [Alpha ][ 0.999606] . ( 5 sec) [ -6491.2969] [ 1245] [depth= 1] . ( 5 sec) [ -6477.7779] [ 1245] [depth= 2] . ( 5 sec) [ -6460.9799] [ 1231] [depth= 2] . ( 6 sec) [ -6452.6526] [ 1229] [depth= 2] . ( 6 sec) [ -6452.3295] [ 1231] [depth= 1] . ( 6 sec) [ -6448.7933] [ 1227] [depth= 1] . ( 6 sec) [ -6439.5767] [ 1222] [depth= 1] . ( 6 sec) [ -6385.5736] [ 1196] [depth= 5] . ( 6 sec) [ -6382.9486] [ 1201] [depth= 1] . ( 7 sec) [ -6382.8797] [ 1203] [depth= 1] . ( 7 sec) [ -6382.4902] [ 1198] [depth= 1] . ( 7 sec) [ -6382.4669] [ 1196] [depth= 1] . ( 8 sec) [ -6382.1673] [ 1195] [depth= 2] . ( 8 sec) [ -6382.0685] [ 1195] [depth= 1] . ( 8 sec) [ -6372.9816] [Branch lengths ] . ( 8 sec) [ -6372.5804] [GTR parameters ] . ( 8 sec) [ -6371.9712] [Alpha ][ 1.111792] . ( 12 sec) [ -6371.5466] [Branch lengths ] . ( 31 sec) [ -6371.5270] [Branch lengths ] . ( 31 sec) [ -6371.5270] [Topology ] . ( 32 sec) [ -6371.5261] [Topology ] . ( 32 sec) [ -6371.5245] [GTR parameters ] . ( 32 sec) [ -6371.5226] [Alpha ][ 1.118671] . ( 32 sec) [ -6371.5226] [Topology ] . ( 33 sec) [ -6371.5223] [Topology ] . ( 33 sec) [ -6371.5223] [GTR parameters ] . ( 33 sec) [ -6371.5223] [Alpha ][ 1.118671] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6371.522332. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16481.0980] [GTR parameters ] . ( 1 sec) [ -16096.9729] [Alpha ][ 0.500960] . ( 1 sec) [ -15989.5780] [ 3165] [depth= 8] . ( 1 sec) [ -15158.7436] [ 3068] [depth= 7] . ( 1 sec) [ -14821.0039] [ 2996] [depth= 8] . ( 1 sec) [ -14744.2020] [ 2960] [depth= 1] . ( 1 sec) [ -14456.1502] [ 2932] [depth= 6] . ( 1 sec) [ -14433.7184] [ 2910] [depth= 3] . ( 1 sec) [ -14341.1415] [ 2906] [depth= 6] . ( 1 sec) [ -14117.2932] [ 2877] [depth= 6] . ( 1 sec) [ -14004.6371] [ 2871] [depth= 3] . ( 1 sec) [ -13949.9723] [ 2868] [depth= 4] . ( 1 sec) [ -13792.4065] [ 2866] [depth= 3] . ( 1 sec) [ -13597.8047] [ 2786] [depth= 11] . ( 1 sec) [ -13295.6658] [ 2701] [depth= 8] . ( 1 sec) [ -13241.2903] [ 2700] [depth= 5] . ( 1 sec) [ -12747.8315] [ 2629] [depth= 4] . ( 2 sec) [ -12739.4883] [ 2609] [depth= 3] . ( 2 sec) [ -12723.2695] [ 2608] [depth= 1] . ( 2 sec) [ -12526.9740] [ 2560] [depth= 5] . ( 2 sec) [ -12359.3039] [ 2540] [depth= 8] . ( 2 sec) [ -12292.4217] [ 2520] [depth= 18] . ( 2 sec) [ -12204.8365] [ 2511] [depth= 4] . ( 2 sec) [ -12097.1907] [ 2533] [depth= 10] . ( 2 sec) [ -12061.3796] [ 2530] [depth= 5] . ( 2 sec) [ -11980.8324] [ 2527] [depth= 3] . ( 2 sec) [ -11855.3444] [ 2534] [depth= 1] . ( 2 sec) [ -11703.4117] [ 2476] [depth= 2] . ( 2 sec) [ -11685.8000] [ 2470] [depth= 5] . ( 2 sec) [ -11451.5360] [ 2468] [depth= 1] . ( 2 sec) [ -11343.2560] [ 2413] [depth= 12] . ( 2 sec) [ -11318.1712] [ 2409] [depth= 1] . ( 2 sec) [ -11191.7225] [ 2359] [depth= 4] . ( 2 sec) [ -11144.9581] [ 2325] [depth= 1] . ( 2 sec) [ -11051.3625] [ 2320] [depth= 4] . ( 2 sec) [ -10976.9130] [ 2324] [depth= 1] . ( 2 sec) [ -10909.1700] [ 2313] [depth= 7] . ( 2 sec) [ -10907.6902] [ 2312] [depth= 1] . ( 2 sec) [ -10650.7476] [ 2199] [depth= 3] . ( 2 sec) [ -10594.8706] [ 2196] [depth= 1] . ( 2 sec) [ -10488.7820] [ 2192] [depth= 9] . ( 2 sec) [ -10441.7296] [ 2199] [depth= 1] . ( 2 sec) [ -10422.6165] [ 2169] [depth= 14] . ( 3 sec) [ -10310.7891] [ 2133] [depth= 12] . ( 3 sec) [ -10299.4803] [ 2131] [depth= 2] . ( 3 sec) [ -10199.8206] [ 2128] [depth= 1] . ( 3 sec) [ -9937.2853] [ 2080] [depth= 5] . ( 3 sec) [ -9919.0816] [ 2072] [depth= 1] . ( 3 sec) [ -9682.5738] [ 2069] [depth= 1] . ( 3 sec) [ -9667.1268] [ 2062] [depth= 1] . ( 3 sec) [ -9632.7443] [ 2051] [depth= 1] . ( 3 sec) [ -9630.2284] [ 1975] [depth= 3] . ( 3 sec) [ -8903.1604] [ 1943] [depth= 5] . ( 3 sec) [ -8893.5139] [ 1930] [depth= 2] . ( 3 sec) [ -8867.6456] [ 1933] [depth= 2] . ( 3 sec) [ -8557.1198] [ 1924] [depth= 2] . ( 3 sec) [ -8548.4554] [ 1886] [depth= 1] . ( 3 sec) [ -8495.7756] [ 1861] [depth= 1] . ( 3 sec) [ -8465.7333] [ 1851] [depth= 5] . ( 3 sec) [ -8283.1914] [ 1777] [depth= 11] . ( 3 sec) [ -8189.8305] [ 1789] [depth= 1] . ( 3 sec) [ -8091.0465] [ 1761] [depth= 2] . ( 3 sec) [ -8061.5304] [ 1749] [depth= 1] . ( 3 sec) [ -7917.0900] [ 1724] [depth= 2] . ( 3 sec) [ -7771.1013] [ 1654] [depth= 11] . ( 4 sec) [ -7714.7783] [ 1643] [depth= 5] . ( 4 sec) [ -7666.9459] [ 1648] [depth= 1] . ( 4 sec) [ -7622.3999] [ 1617] [depth= 1] . ( 4 sec) [ -7520.2072] [ 1576] [depth= 8] . ( 4 sec) [ -7489.4175] [ 1480] [depth= 5] . ( 4 sec) [ -7486.1909] [ 1481] [depth= 1] . ( 4 sec) [ -7431.1754] [ 1473] [depth= 2] . ( 4 sec) [ -7323.4350] [ 1465] [depth= 7] . ( 4 sec) [ -7244.7662] [ 1444] [depth= 4] . ( 4 sec) [ -7230.1783] [ 1439] [depth= 2] . ( 4 sec) [ -7219.0782] [ 1434] [depth= 1] . ( 4 sec) [ -7213.9898] [ 1431] [depth= 1] . ( 4 sec) [ -7209.6753] [ 1430] [depth= 1] . ( 4 sec) [ -7174.9460] [ 1419] [depth= 4] . ( 4 sec) [ -7159.8371] [ 1409] [depth= 5] . ( 4 sec) [ -7159.3857] [ 1408] [depth= 1] . ( 4 sec) [ -7077.4189] [ 1378] [depth= 4] . ( 4 sec) [ -6975.3746] [ 1345] [depth= 3] . ( 4 sec) [ -6927.7613] [ 1332] [depth= 1] . ( 4 sec) [ -6864.3441] [ 1319] [depth= 4] . ( 4 sec) [ -6860.7820] [ 1321] [depth= 1] . ( 4 sec) [ -6773.0869] [ 1282] [depth= 1] . ( 5 sec) [ -6759.7659] [ 1273] [depth= 1] . ( 5 sec) [ -6617.9963] [ 1239] [depth= 5] . ( 5 sec) [ -6500.4868] [ 1211] [depth= 4] . ( 5 sec) [ -6500.3454] [ 1213] [depth= 1] . ( 5 sec) [ -6469.9403] [ 1206] [depth= 1] . ( 5 sec) [ -6435.9223] [Branch lengths ] . ( 5 sec) [ -6428.8722] [GTR parameters ] . ( 6 sec) [ -6395.1318] [Alpha ][ 1.000146] . ( 6 sec) [ -6395.1066] [ 1206] [depth= 1] . ( 6 sec) [ -6395.0347] [ 1206] [depth= 1] . ( 7 sec) [ -6386.7374] [ 1202] [depth= 1] . ( 7 sec) [ -6385.9321] [ 1205] [depth= 1] . ( 7 sec) [ -6383.5644] [ 1204] [depth= 1] . ( 7 sec) [ -6379.0715] [ 1200] [depth= 1] . ( 7 sec) [ -6378.8094] [ 1200] [depth= 1] . ( 7 sec) [ -6378.7861] [ 1198] [depth= 1] . ( 7 sec) [ -6378.1153] [ 1198] [depth= 1] . ( 7 sec) [ -6377.6320] [ 1197] [depth= 1] . ( 8 sec) [ -6376.6927] [ 1197] [depth= 1] . ( 9 sec) [ -6372.4090] [Branch lengths ] . ( 10 sec) [ -6372.3219] [GTR parameters ] . ( 10 sec) [ -6371.7669] [Alpha ][ 1.107829] . ( 13 sec) [ -6371.5538] [Branch lengths ] . ( 32 sec) [ -6371.5305] [Branch lengths ] . ( 32 sec) [ -6371.5305] [Topology ] . ( 33 sec) [ -6371.5290] [Topology ] . ( 34 sec) [ -6371.5285] [Topology ] . ( 34 sec) [ -6371.5275] [GTR parameters ] . ( 34 sec) [ -6371.5230] [Alpha ][ 1.118386] . ( 34 sec) [ -6371.5230] [Topology ] . ( 35 sec) [ -6371.5226] [Topology ] . ( 35 sec) [ -6371.5226] [GTR parameters ] . ( 35 sec) [ -6371.5226] [Alpha ][ 1.118386] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6371.522586. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16583.7222] [GTR parameters ] . ( 1 sec) [ -16183.0519] [Alpha ][ 0.500960] . ( 1 sec) [ -15546.7013] [ 3212] [depth= 6] . ( 1 sec) [ -15344.5189] [ 3145] [depth= 11] . ( 1 sec) [ -15244.0343] [ 3119] [depth= 3] . ( 1 sec) [ -15215.3424] [ 3114] [depth= 1] . ( 1 sec) [ -15051.5233] [ 3046] [depth= 7] . ( 1 sec) [ -14975.2942] [ 3041] [depth= 4] . ( 1 sec) [ -14874.1079] [ 3027] [depth= 6] . ( 1 sec) [ -14559.0628] [ 2947] [depth= 1] . ( 2 sec) [ -14462.2634] [ 2890] [depth= 6] . ( 2 sec) [ -14379.8073] [ 2868] [depth= 1] . ( 2 sec) [ -13746.5092] [ 2861] [depth= 16] . ( 2 sec) [ -13411.2928] [ 2788] [depth= 17] . ( 2 sec) [ -13149.5067] [ 2780] [depth= 1] . ( 2 sec) [ -13006.7026] [ 2772] [depth= 3] . ( 2 sec) [ -12870.9028] [ 2771] [depth= 8] . ( 2 sec) [ -12785.5416] [ 2767] [depth= 3] . ( 2 sec) [ -12637.7429] [ 2680] [depth= 9] . ( 2 sec) [ -12505.5972] [ 2663] [depth= 14] . ( 2 sec) [ -12437.8823] [ 2651] [depth= 1] . ( 2 sec) [ -12100.5734] [ 2601] [depth= 3] . ( 2 sec) [ -11971.0722] [ 2601] [depth= 9] . ( 2 sec) [ -11677.1921] [ 2494] [depth= 6] . ( 2 sec) [ -11346.5262] [ 2485] [depth= 1] . ( 2 sec) [ -11271.0185] [ 2493] [depth= 1] . ( 2 sec) [ -11031.8425] [ 2401] [depth= 7] . ( 2 sec) [ -10886.3765] [ 2374] [depth= 1] . ( 2 sec) [ -10822.7223] [ 2363] [depth= 1] . ( 2 sec) [ -10765.7154] [ 2331] [depth= 4] . ( 2 sec) [ -10649.1594] [ 2325] [depth= 1] . ( 2 sec) [ -10524.3093] [ 2297] [depth= 15] . ( 2 sec) [ -10274.2673] [ 2189] [depth= 1] . ( 2 sec) [ -10179.7511] [ 2163] [depth= 3] . ( 3 sec) [ -10170.0733] [ 2168] [depth= 1] . ( 3 sec) [ -10138.8071] [ 2155] [depth= 5] . ( 3 sec) [ -9861.5590] [ 2068] [depth= 11] . ( 3 sec) [ -9856.6086] [ 2072] [depth= 1] . ( 3 sec) [ -9817.0416] [ 2058] [depth= 1] . ( 3 sec) [ -9621.3955] [ 2033] [depth= 3] . ( 3 sec) [ -9578.6696] [ 2013] [depth= 1] . ( 3 sec) [ -9499.8550] [ 1999] [depth= 9] . ( 3 sec) [ -9257.5538] [ 1958] [depth= 9] . ( 3 sec) [ -9248.6779] [ 1957] [depth= 2] . ( 3 sec) [ -9233.9490] [ 1916] [depth= 8] . ( 3 sec) [ -9159.8884] [ 1919] [depth= 8] . ( 3 sec) [ -9124.8527] [ 1899] [depth= 1] . ( 3 sec) [ -9080.6453] [ 1881] [depth= 7] . ( 3 sec) [ -8858.8318] [ 1872] [depth= 4] . ( 3 sec) [ -8613.9698] [ 1783] [depth= 4] . ( 3 sec) [ -8465.0153] [ 1777] [depth= 3] . ( 3 sec) [ -8413.1443] [ 1766] [depth= 3] . ( 3 sec) [ -8060.1273] [ 1766] [depth= 1] . ( 3 sec) [ -7938.6668] [ 1742] [depth= 1] . ( 3 sec) [ -7881.0981] [ 1640] [depth= 2] . ( 3 sec) [ -7879.8187] [ 1640] [depth= 1] . ( 3 sec) [ -7878.5151] [ 1644] [depth= 1] . ( 4 sec) [ -7868.6061] [ 1638] [depth= 1] . ( 4 sec) [ -7859.3530] [ 1636] [depth= 1] . ( 4 sec) [ -7777.0942] [ 1627] [depth= 2] . ( 4 sec) [ -7655.2279] [ 1622] [depth= 6] . ( 4 sec) [ -7587.0900] [ 1529] [depth= 2] . ( 4 sec) [ -7424.1847] [ 1546] [depth= 1] . ( 4 sec) [ -7339.7520] [ 1527] [depth= 3] . ( 4 sec) [ -7299.7484] [ 1528] [depth= 1] . ( 4 sec) [ -7294.3740] [ 1517] [depth= 2] . ( 4 sec) [ -7292.0776] [ 1517] [depth= 1] . ( 4 sec) [ -7264.5852] [ 1511] [depth= 3] . ( 4 sec) [ -7248.8302] [ 1508] [depth= 5] . ( 4 sec) [ -7240.8421] [ 1500] [depth= 2] . ( 4 sec) [ -7237.2650] [ 1499] [depth= 3] . ( 4 sec) [ -7054.2237] [ 1453] [depth= 6] . ( 4 sec) [ -6979.0225] [ 1458] [depth= 1] . ( 4 sec) [ -6966.8682] [ 1457] [depth= 1] . ( 4 sec) [ -6739.2632] [ 1356] [depth= 7] . ( 4 sec) [ -6735.1765] [ 1353] [depth= 1] . ( 4 sec) [ -6724.6653] [ 1349] [depth= 4] . ( 4 sec) [ -6722.3377] [ 1349] [depth= 1] . ( 4 sec) [ -6718.9851] [ 1346] [depth= 1] . ( 4 sec) [ -6711.5190] [ 1343] [depth= 3] . ( 5 sec) [ -6710.5498] [ 1347] [depth= 1] . ( 5 sec) [ -6709.4561] [ 1344] [depth= 1] . ( 5 sec) [ -6688.0198] [ 1326] [depth= 1] . ( 5 sec) [ -6687.6898] [ 1327] [depth= 1] . ( 5 sec) [ -6682.1089] [ 1322] [depth= 2] . ( 5 sec) [ -6625.0473] [Branch lengths ] . ( 6 sec) [ -6613.3268] [GTR parameters ] . ( 6 sec) [ -6591.1450] [Alpha ][ 0.881772] . ( 6 sec) [ -6579.2175] [ 1316] [depth= 1] . ( 6 sec) [ -6578.6578] [ 1312] [depth= 1] . ( 6 sec) [ -6500.5932] [ 1281] [depth= 1] . ( 6 sec) [ -6499.5489] [ 1270] [depth= 2] . ( 6 sec) [ -6497.6344] [ 1234] [depth= 2] . ( 6 sec) [ -6490.5629] [ 1239] [depth= 1] . ( 6 sec) [ -6469.3068] [ 1236] [depth= 1] . ( 7 sec) [ -6467.4381] [ 1232] [depth= 1] . ( 7 sec) [ -6457.6700] [ 1235] [depth= 1] . ( 7 sec) [ -6457.4535] [ 1236] [depth= 1] . ( 7 sec) [ -6450.6495] [ 1235] [depth= 1] . ( 7 sec) [ -6449.9478] [ 1235] [depth= 2] . ( 7 sec) [ -6443.5079] [ 1229] [depth= 3] . ( 7 sec) [ -6421.6657] [ 1212] [depth= 1] . ( 7 sec) [ -6419.5236] [ 1211] [depth= 1] . ( 7 sec) [ -6414.2299] [ 1207] [depth= 1] . ( 7 sec) [ -6413.9679] [ 1208] [depth= 2] . ( 8 sec) [ -6413.4577] [ 1206] [depth= 1] . ( 8 sec) [ -6389.6888] [ 1195] [depth= 1] . ( 9 sec) [ -6381.5860] [Branch lengths ] . ( 9 sec) [ -6381.1712] [GTR parameters ] . ( 10 sec) [ -6378.4931] [Alpha ][ 1.101197] . ( 10 sec) [ -6378.3538] [ 1194] [depth= 1] . ( 13 sec) [ -6377.2844] [Branch lengths ] . ( 13 sec) [ -6377.2830] [GTR parameters ] . ( 13 sec) [ -6377.2701] [Alpha ][ 1.119243] . ( 17 sec) [ -6375.3200] [Branch lengths ] . ( 36 sec) [ -6372.4942] [Branch lengths ] . ( 36 sec) [ -6372.4942] [Topology ] . ( 36 sec) [ -6371.9159] [Topology ] . ( 37 sec) [ -6371.7054] [Topology ] . ( 38 sec) [ -6371.6498] [Topology ] . ( 38 sec) [ -6371.6367] [Topology ] . ( 39 sec) [ -6371.6335] [Topology ] . ( 40 sec) [ -6371.6327] [Topology ] . ( 40 sec) [ -6371.6200] [GTR parameters ] . ( 40 sec) [ -6371.6194] [Alpha ][ 1.123034] . ( 40 sec) [ -6371.6194] [Topology ] . ( 41 sec) [ -6371.6190] [Topology ] . ( 41 sec) [ -6371.6190] [GTR parameters ] . ( 41 sec) [ -6371.6190] [Alpha ][ 1.123034] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6371.619020. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-6406.286429 . ( 1 sec) [ -6402.1884] [GTR parameters ] . ( 1 sec) [ -6401.7922] [Alpha ][ 1.092051] . ( 1 sec) [ -6401.7922] [Topology ] . ( 1 sec) [ -6375.9310] [Topology ] . ( 2 sec) [ -6372.7229] [Topology ] . ( 3 sec) [ -6372.0135] [Topology ] . ( 4 sec) [ -6371.8040] [Topology ] . ( 4 sec) [ -6371.7320] [Topology ] . ( 5 sec) [ -6371.7049] [Topology ] . ( 6 sec) [ -6371.6942] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-6371.694164 . ( 11 sec) [ -6371.6671] [GTR parameters ] . ( 11 sec) [ -6371.6314] [Alpha ][ 1.120840] . ( 11 sec) [ -6371.6314] [Topology ] . ( 11 sec) [ -6371.6239] [Topology ] . ( 12 sec) [ -6371.6210] [Topology ] . ( 13 sec) [ -6371.6198] [Topology ] . ( 13 sec) [ -6371.6193] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-6371.619333 . ( 18 sec) [ -6371.6193] [GTR parameters ] . ( 18 sec) [ -6371.6191] [Alpha ][ 1.122924] . ( 18 sec) [ -6371.6191] [Topology ] . ( 19 sec) [ -6371.6189] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 28 sec) [ -6402.1884] [GTR parameters ] . ( 28 sec) [ -6401.7922] [Alpha ][ 1.092051] . ( 29 sec) [ -6395.3228] [ 1195] [depth= 1] . ( 29 sec) [ -6395.0715] [ 1197] [depth= 1] . ( 29 sec) [ -6394.7013] [ 1195] [depth= 1] . ( 30 sec) [ -6393.9281] [ 1200] [depth= 1] . ( 30 sec) [ -6393.7546] [ 1198] [depth= 1] . ( 30 sec) [ -6393.4548] [ 1200] [depth= 1] . ( 31 sec) [ -6393.4358] [ 1202] [depth= 1] . ( 31 sec) [ -6392.7700] [ 1203] [depth= 2] . ( 31 sec) [ -6391.9102] [ 1200] [depth= 2] . ( 32 sec) [ -6374.3950] [Branch lengths ] . ( 32 sec) [ -6374.3706] [GTR parameters ] . ( 32 sec) [ -6374.3494] [Alpha ][ 1.114011] . ( 33 sec) [ -6374.2988] [ 1202] [depth= 1] . ( 33 sec) [ -6373.3996] [ 1198] [depth= 1] . ( 34 sec) [ -6373.1024] [ 1196] [depth= 1] . ( 35 sec) [ -6371.6723] [Branch lengths ] . ( 36 sec) [ -6371.6698] [GTR parameters ] . ( 36 sec) [ -6371.6677] [Alpha ][ 1.121213] . ( 39 sec) [ -6371.6228] [Branch lengths ] . ( 58 sec) [ -6371.6191] [Branch lengths ] . ( 58 sec) [ -6371.6191] [Topology ] . ( 59 sec) [ -6371.6189] [Topology ] . ( 59 sec) [ -6371.6189] [GTR parameters ] . ( 59 sec) [ -6371.6187] [Alpha ][ 1.122978] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -6371.618861 . Log likelihood obtained after SPR moves : -6371.618710 . Log likelihood of the current tree: -6371.618710. . Printing the most likely tree in file 'data55.phy_phyml_tree.txt'... . Best log likelihood : -6371.522328 . Time used 0h1m4s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo