.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data62.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 398 patterns found. (out of a total of 500 sites) . 95 sites without polymorphism (19.00%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -22895.1798] [GTR parameters ] . ( 1 sec) [ -22506.8215] [Alpha ][ 0.500960] . ( 1 sec) [ -21736.7613] [ 3899] [depth= 8] . ( 1 sec) [ -21451.0050] [ 3886] [depth= 6] . ( 1 sec) [ -21104.5472] [ 3860] [depth= 1] . ( 1 sec) [ -21087.8016] [ 3855] [depth= 5] . ( 1 sec) [ -21041.9645] [ 3819] [depth= 5] . ( 1 sec) [ -20910.3402] [ 3817] [depth= 1] . ( 1 sec) [ -20856.9109] [ 3788] [depth= 5] . ( 1 sec) [ -20780.0966] [ 3801] [depth= 1] . ( 1 sec) [ -20768.8335] [ 3811] [depth= 1] . ( 1 sec) [ -16795.4422] [ 3769] [depth= 12] . ( 1 sec) [ -16542.2543] [ 3859] [depth= 1] . ( 1 sec) [ -16255.3878] [ 3778] [depth= 8] . ( 1 sec) [ -15859.6348] [ 3587] [depth= 2] . ( 1 sec) [ -15514.3882] [ 3522] [depth= 4] . ( 1 sec) [ -15267.2777] [ 3504] [depth= 3] . ( 1 sec) [ -14933.1002] [ 3496] [depth= 7] . ( 1 sec) [ -14679.9299] [ 3373] [depth= 4] . ( 1 sec) [ -14668.3578] [ 3372] [depth= 1] . ( 1 sec) [ -14659.8670] [ 3366] [depth= 1] . ( 1 sec) [ -14503.6294] [ 3363] [depth= 2] . ( 1 sec) [ -14390.5098] [ 3307] [depth= 7] . ( 1 sec) [ -14260.7629] [ 3226] [depth= 10] . ( 1 sec) [ -14260.6545] [ 3228] [depth= 1] . ( 1 sec) [ -14013.7191] [ 3163] [depth= 7] . ( 2 sec) [ -13989.3561] [ 3158] [depth= 1] . ( 2 sec) [ -13818.9000] [ 3091] [depth= 2] . ( 2 sec) [ -13552.1791] [ 3033] [depth= 5] . ( 2 sec) [ -13278.7912] [ 2994] [depth= 8] . ( 2 sec) [ -13243.9397] [ 2993] [depth= 3] . ( 2 sec) [ -13229.4503] [ 2990] [depth= 1] . ( 2 sec) [ -13029.5633] [ 2942] [depth= 2] . ( 2 sec) [ -12979.4766] [ 2938] [depth= 7] . ( 2 sec) [ -12869.6131] [ 2940] [depth= 1] . ( 2 sec) [ -12772.3729] [ 2897] [depth= 3] . ( 2 sec) [ -12677.9649] [ 2861] [depth= 11] . ( 2 sec) [ -12597.9924] [ 2834] [depth= 5] . ( 2 sec) [ -12513.4621] [ 2829] [depth= 1] . ( 2 sec) [ -12481.5062] [ 2810] [depth= 1] . ( 2 sec) [ -12221.5550] [ 2711] [depth= 12] . ( 2 sec) [ -12221.2593] [ 2716] [depth= 1] . ( 2 sec) [ -11679.8737] [ 2634] [depth= 2] . ( 2 sec) [ -11428.7856] [ 2573] [depth= 7] . ( 2 sec) [ -11004.5346] [ 2458] [depth= 14] . ( 2 sec) [ -10888.7961] [ 2439] [depth= 1] . ( 2 sec) [ -10879.4472] [ 2455] [depth= 1] . ( 2 sec) [ -10822.3758] [ 2454] [depth= 1] . ( 2 sec) [ -10821.2264] [ 2439] [depth= 1] . ( 2 sec) [ -10496.3230] [ 2289] [depth= 14] . ( 3 sec) [ -10315.6519] [ 2298] [depth= 12] . ( 3 sec) [ -10312.7189] [ 2293] [depth= 1] . ( 3 sec) [ -10233.1840] [ 2259] [depth= 3] . ( 3 sec) [ -10135.1010] [ 2246] [depth= 3] . ( 3 sec) [ -9847.9943] [ 2128] [depth= 15] . ( 3 sec) [ -9829.9566] [ 2125] [depth= 1] . ( 3 sec) [ -9631.2891] [ 2122] [depth= 6] . ( 3 sec) [ -9464.8932] [ 1992] [depth= 6] . ( 3 sec) [ -9171.1410] [ 2003] [depth= 1] . ( 3 sec) [ -9109.5245] [ 1932] [depth= 2] . ( 3 sec) [ -9094.7258] [ 1924] [depth= 1] . ( 3 sec) [ -8837.5876] [ 1913] [depth= 3] . ( 3 sec) [ -8801.7722] [ 1883] [depth= 3] . ( 3 sec) [ -8801.1244] [ 1901] [depth= 1] . ( 3 sec) [ -8624.4820] [ 1824] [depth= 5] . ( 3 sec) [ -8591.7833] [ 1817] [depth= 1] . ( 3 sec) [ -8582.9708] [ 1793] [depth= 7] . ( 3 sec) [ -8582.6077] [ 1797] [depth= 1] . ( 3 sec) [ -8580.1804] [ 1798] [depth= 1] . ( 3 sec) [ -8500.1250] [ 1769] [depth= 1] . ( 4 sec) [ -8488.6119] [ 1759] [depth= 1] . ( 4 sec) [ -8482.3937] [ 1767] [depth= 5] . ( 4 sec) [ -8480.0551] [ 1771] [depth= 1] . ( 4 sec) [ -8359.6897] [ 1730] [depth= 4] . ( 4 sec) [ -8350.2584] [ 1740] [depth= 1] . ( 4 sec) [ -8349.0974] [ 1742] [depth= 1] . ( 4 sec) [ -8348.4257] [ 1746] [depth= 1] . ( 4 sec) [ -8346.0088] [ 1745] [depth= 1] . ( 4 sec) [ -8338.4633] [ 1736] [depth= 1] . ( 4 sec) [ -8337.8389] [ 1725] [depth= 1] . ( 4 sec) [ -8323.6476] [ 1718] [depth= 2] . ( 4 sec) [ -8321.1889] [ 1717] [depth= 1] . ( 4 sec) [ -8231.8363] [Branch lengths ] . ( 5 sec) [ -8230.6123] [GTR parameters ] . ( 5 sec) [ -8204.6661] [Alpha ][ 0.858010] . ( 5 sec) [ -8195.6039] [ 1715] [depth= 2] . ( 5 sec) [ -8195.2580] [ 1726] [depth= 1] . ( 5 sec) [ -8193.2776] [ 1720] [depth= 1] . ( 6 sec) [ -8192.9687] [ 1720] [depth= 1] . ( 6 sec) [ -8182.0803] [ 1701] [depth= 1] . ( 6 sec) [ -8180.8389] [ 1690] [depth= 1] . ( 8 sec) [ -8174.3228] [Branch lengths ] . ( 8 sec) [ -8174.2110] [GTR parameters ] . ( 8 sec) [ -8173.9894] [Alpha ][ 0.903218] . ( 11 sec) [ -8173.4507] [Branch lengths ] . ( 30 sec) [ -8173.3407] [Branch lengths ] . ( 30 sec) [ -8173.3407] [Topology ] . ( 31 sec) [ -8173.3285] [Topology ] . ( 32 sec) [ -8173.3238] [Topology ] . ( 33 sec) [ -8173.3193] [Topology ] . ( 33 sec) [ -8173.2993] [Topology ] . ( 34 sec) [ -8173.1563] [Topology ] . ( 35 sec) [ -8172.2328] [Topology ] . ( 35 sec) [ -8172.2309] [GTR parameters ] . ( 35 sec) [ -8172.2198] [Alpha ][ 0.913823] . ( 35 sec) [ -8172.2198] [Topology ] . ( 36 sec) [ -8169.3235] [Topology ] . ( 37 sec) [ -8168.1142] [Topology ] . ( 38 sec) [ -8167.5896] [Topology ] . ( 38 sec) [ -8167.3451] [Topology ] . ( 39 sec) [ -8167.2302] [Topology ] . ( 40 sec) [ -8167.1771] [Topology ] . ( 40 sec) [ -8167.1645] [GTR parameters ] . ( 40 sec) [ -8167.1555] [Alpha ][ 0.923481] . ( 41 sec) [ -8167.1555] [Topology ] . ( 41 sec) [ -8167.1293] [Topology ] . ( 42 sec) [ -8167.1177] [Topology ] . ( 43 sec) [ -8167.1123] [Topology ] . ( 44 sec) [ -8167.1098] [Topology ] . ( 44 sec) [ -8167.1087] [Topology ] . ( 45 sec) [ -8167.1082] [Topology ] . ( 45 sec) [ -8167.1081] [GTR parameters ] . ( 45 sec) [ -8167.1081] [Alpha ][ 0.923481] . ( 45 sec) [ -8167.1081] [Topology ] . ( 46 sec) [ -8167.1078] [Topology ] . ( 46 sec) [ -8167.1078] [GTR parameters ] . ( 46 sec) [ -8167.1078] [Alpha ][ 0.923481] . Checking for NNIs, optimizing five branches... . ( 52 sec) [ -8167.0931] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8167.093116. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -21927.3953] [GTR parameters ] . ( 1 sec) [ -21546.1251] [Alpha ][ 0.500960] . ( 1 sec) [ -20919.8903] [ 3858] [depth= 3] . ( 1 sec) [ -20566.0125] [ 3743] [depth= 3] . ( 1 sec) [ -20447.4870] [ 3707] [depth= 4] . ( 1 sec) [ -20354.1116] [ 3705] [depth= 7] . ( 1 sec) [ -20259.9571] [ 3654] [depth= 1] . ( 1 sec) [ -20157.9640] [ 3651] [depth= 1] . ( 1 sec) [ -20051.8975] [ 3658] [depth= 1] . ( 1 sec) [ -19783.5848] [ 3643] [depth= 4] . ( 1 sec) [ -19699.3455] [ 3523] [depth= 2] . ( 2 sec) [ -19585.8226] [ 3506] [depth= 3] . ( 2 sec) [ -19492.8362] [ 3465] [depth= 10] . ( 2 sec) [ -19449.6679] [ 3461] [depth= 3] . ( 2 sec) [ -19337.1552] [ 3391] [depth= 1] . ( 2 sec) [ -19322.4261] [ 3386] [depth= 2] . ( 2 sec) [ -18806.8726] [ 3279] [depth= 19] . ( 2 sec) [ -18467.4229] [ 3168] [depth= 11] . ( 2 sec) [ -18017.8471] [ 3070] [depth= 4] . ( 2 sec) [ -17754.9850] [ 3005] [depth= 3] . ( 2 sec) [ -14393.9238] [ 3000] [depth= 1] . ( 2 sec) [ -13722.6827] [ 2974] [depth= 4] . ( 2 sec) [ -13698.2122] [ 2971] [depth= 1] . ( 2 sec) [ -13559.7908] [ 2922] [depth= 1] . ( 2 sec) [ -13393.5397] [ 2859] [depth= 3] . ( 2 sec) [ -13182.8160] [ 2789] [depth= 7] . ( 2 sec) [ -12965.3610] [ 2678] [depth= 5] . ( 2 sec) [ -12915.6665] [ 2678] [depth= 1] . ( 2 sec) [ -12904.7729] [ 2682] [depth= 1] . ( 2 sec) [ -12886.7870] [ 2672] [depth= 1] . ( 2 sec) [ -12528.2988] [ 2598] [depth= 7] . ( 2 sec) [ -12143.7903] [ 2503] [depth= 8] . ( 2 sec) [ -11722.8333] [ 2490] [depth= 4] . ( 2 sec) [ -11546.9927] [ 2396] [depth= 2] . ( 2 sec) [ -11522.2712] [ 2398] [depth= 1] . ( 3 sec) [ -11409.4157] [ 2396] [depth= 2] . ( 3 sec) [ -11230.5412] [ 2393] [depth= 3] . ( 3 sec) [ -11055.1739] [ 2354] [depth= 1] . ( 3 sec) [ -10906.3446] [ 2304] [depth= 2] . ( 3 sec) [ -10846.7763] [ 2300] [depth= 1] . ( 3 sec) [ -10796.8525] [ 2287] [depth= 1] . ( 3 sec) [ -10775.2533] [ 2290] [depth= 2] . ( 3 sec) [ -10714.0808] [ 2295] [depth= 3] . ( 3 sec) [ -10500.8017] [ 2220] [depth= 4] . ( 3 sec) [ -10464.8560] [ 2212] [depth= 3] . ( 3 sec) [ -10454.8060] [ 2212] [depth= 1] . ( 3 sec) [ -10133.6172] [ 2133] [depth= 7] . ( 3 sec) [ -10008.3928] [ 2130] [depth= 1] . ( 3 sec) [ -9787.7079] [ 2112] [depth= 1] . ( 3 sec) [ -9672.4496] [ 2090] [depth= 2] . ( 3 sec) [ -9661.5363] [ 2095] [depth= 1] . ( 3 sec) [ -9526.1934] [ 2061] [depth= 3] . ( 3 sec) [ -9526.0131] [ 2056] [depth= 1] . ( 3 sec) [ -9510.7002] [ 2042] [depth= 6] . ( 4 sec) [ -9404.5442] [ 1960] [depth= 10] . ( 4 sec) [ -9300.3002] [ 1981] [depth= 1] . ( 4 sec) [ -9292.6594] [ 1960] [depth= 1] . ( 4 sec) [ -9202.3606] [ 1928] [depth= 1] . ( 4 sec) [ -9088.9151] [ 1901] [depth= 11] . ( 4 sec) [ -9055.8184] [ 1882] [depth= 1] . ( 4 sec) [ -9045.5400] [ 1881] [depth= 1] . ( 4 sec) [ -8828.9431] [ 1893] [depth= 1] . ( 4 sec) [ -8771.7880] [ 1879] [depth= 5] . ( 4 sec) [ -8770.4787] [ 1879] [depth= 1] . ( 4 sec) [ -8767.1877] [ 1886] [depth= 1] . ( 4 sec) [ -8762.4193] [ 1888] [depth= 1] . ( 4 sec) [ -8747.9925] [ 1884] [depth= 1] . ( 4 sec) [ -8667.7690] [ 1848] [depth= 3] . ( 4 sec) [ -8626.6776] [ 1846] [depth= 1] . ( 4 sec) [ -8623.6593] [ 1843] [depth= 1] . ( 4 sec) [ -8594.1923] [ 1835] [depth= 3] . ( 5 sec) [ -8583.8585] [ 1814] [depth= 3] . ( 5 sec) [ -8581.8621] [ 1817] [depth= 1] . ( 5 sec) [ -8573.9095] [ 1821] [depth= 2] . ( 5 sec) [ -8552.2094] [ 1807] [depth= 1] . ( 5 sec) [ -8525.1806] [ 1788] [depth= 1] . ( 5 sec) [ -8378.3044] [Branch lengths ] . ( 6 sec) [ -8374.7871] [GTR parameters ] . ( 6 sec) [ -8352.2914] [Alpha ][ 0.826647] . ( 6 sec) [ -8328.8604] [ 1775] [depth= 1] . ( 6 sec) [ -8314.3867] [ 1766] [depth= 1] . ( 6 sec) [ -8290.6651] [ 1756] [depth= 1] . ( 6 sec) [ -8288.6240] [ 1761] [depth= 1] . ( 6 sec) [ -8288.2750] [ 1763] [depth= 1] . ( 6 sec) [ -8285.5931] [ 1758] [depth= 1] . ( 6 sec) [ -8285.4647] [ 1755] [depth= 2] . ( 6 sec) [ -8275.2772] [ 1737] [depth= 2] . ( 7 sec) [ -8274.8359] [ 1737] [depth= 1] . ( 7 sec) [ -8273.1384] [ 1736] [depth= 1] . ( 7 sec) [ -8270.4584] [ 1736] [depth= 1] . ( 7 sec) [ -8224.4704] [ 1711] [depth= 1] . ( 7 sec) [ -8210.3203] [ 1707] [depth= 1] . ( 7 sec) [ -8209.8463] [ 1707] [depth= 1] . ( 7 sec) [ -8209.6963] [ 1695] [depth= 1] . ( 7 sec) [ -8198.7071] [ 1688] [depth= 1] . ( 7 sec) [ -8198.4479] [ 1689] [depth= 1] . ( 8 sec) [ -8195.4134] [ 1690] [depth= 1] . ( 8 sec) [ -8195.3721] [ 1701] [depth= 1] . ( 8 sec) [ -8195.1614] [ 1707] [depth= 1] . ( 8 sec) [ -8191.4437] [ 1701] [depth= 1] . ( 9 sec) [ -8173.0572] [Branch lengths ] . ( 9 sec) [ -8172.9629] [GTR parameters ] . ( 9 sec) [ -8172.1745] [Alpha ][ 0.910862] . ( 10 sec) [ -8172.0672] [ 1701] [depth= 1] . ( 10 sec) [ -8171.9745] [ 1698] [depth= 1] . ( 10 sec) [ -8170.7462] [ 1687] [depth= 1] . ( 10 sec) [ -8170.6945] [ 1690] [depth= 1] . ( 11 sec) [ -8170.2186] [ 1687] [depth= 1] . ( 12 sec) [ -8167.5513] [Branch lengths ] . ( 12 sec) [ -8167.5265] [GTR parameters ] . ( 12 sec) [ -8167.5150] [Alpha ][ 0.921866] . ( 15 sec) [ -8167.1367] [Branch lengths ] . ( 34 sec) [ -8167.0967] [Branch lengths ] . ( 34 sec) [ -8167.0967] [Topology ] . ( 35 sec) [ -8167.0930] [Topology ] . ( 36 sec) [ -8167.0916] [Topology ] . ( 36 sec) [ -8167.0909] [Topology ] . ( 37 sec) [ -8167.0906] [GTR parameters ] . ( 37 sec) [ -8167.0893] [Alpha ][ 0.925572] . ( 37 sec) [ -8167.0893] [Topology ] . ( 37 sec) [ -8167.0888] [Topology ] . ( 38 sec) [ -8167.0888] [GTR parameters ] . ( 38 sec) [ -8167.0888] [Alpha ][ 0.925572] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8167.088799. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -22908.6546] [GTR parameters ] . ( 0 sec) [ -22492.9162] [Alpha ][ 0.500960] . ( 0 sec) [ -21841.7725] [ 4034] [depth= 8] . ( 0 sec) [ -21309.1347] [ 3908] [depth= 8] . ( 0 sec) [ -21250.4602] [ 3901] [depth= 4] . ( 1 sec) [ -21064.6159] [ 3895] [depth= 4] . ( 1 sec) [ -20777.9074] [ 3839] [depth= 5] . ( 1 sec) [ -20681.2983] [ 3840] [depth= 4] . ( 1 sec) [ -20471.0351] [ 3780] [depth= 8] . ( 1 sec) [ -20240.4887] [ 3753] [depth= 8] . ( 1 sec) [ -19843.0236] [ 3637] [depth= 1] . ( 1 sec) [ -19686.4497] [ 3599] [depth= 14] . ( 1 sec) [ -19507.2870] [ 3582] [depth= 8] . ( 1 sec) [ -19072.3196] [ 3440] [depth= 6] . ( 1 sec) [ -19032.9091] [ 3430] [depth= 8] . ( 1 sec) [ -19016.4777] [ 3427] [depth= 1] . ( 1 sec) [ -18896.2708] [ 3402] [depth= 1] . ( 1 sec) [ -18865.6579] [ 3399] [depth= 1] . ( 1 sec) [ -18743.3801] [ 3397] [depth= 1] . ( 1 sec) [ -18727.0716] [ 3393] [depth= 1] . ( 1 sec) [ -18437.7083] [ 3376] [depth= 9] . ( 1 sec) [ -18244.0656] [ 3307] [depth= 6] . ( 1 sec) [ -18206.4739] [ 3266] [depth= 10] . ( 1 sec) [ -18134.6542] [ 3239] [depth= 1] . ( 1 sec) [ -18055.6924] [ 3216] [depth= 5] . ( 1 sec) [ -17611.4685] [ 3096] [depth= 6] . ( 1 sec) [ -17539.6946] [ 3059] [depth= 4] . ( 1 sec) [ -17465.9046] [ 3039] [depth= 1] . ( 2 sec) [ -17108.3271] [ 2938] [depth= 4] . ( 2 sec) [ -17056.3454] [ 2939] [depth= 3] . ( 2 sec) [ -16857.4072] [ 2821] [depth= 6] . ( 2 sec) [ -16832.6633] [ 2817] [depth= 1] . ( 2 sec) [ -16634.8566] [ 2785] [depth= 7] . ( 2 sec) [ -16486.3892] [ 2755] [depth= 9] . ( 2 sec) [ -16419.7666] [ 2732] [depth= 4] . ( 2 sec) [ -15959.1496] [ 2709] [depth= 10] . ( 2 sec) [ -15854.7654] [ 2664] [depth= 6] . ( 2 sec) [ -15844.4361] [ 2672] [depth= 1] . ( 2 sec) [ -15649.7896] [ 2671] [depth= 9] . ( 2 sec) [ -15637.3223] [ 2665] [depth= 1] . ( 2 sec) [ -15488.5854] [ 2643] [depth= 10] . ( 2 sec) [ -15272.4161] [ 2527] [depth= 9] . ( 2 sec) [ -15269.6203] [ 2527] [depth= 1] . ( 2 sec) [ -14982.2586] [ 2540] [depth= 11] . ( 2 sec) [ -14832.9064] [ 2515] [depth= 10] . ( 2 sec) [ -14655.2024] [ 2463] [depth= 8] . ( 2 sec) [ -14638.8057] [ 2437] [depth= 1] . ( 2 sec) [ -14582.3791] [ 2430] [depth= 1] . ( 2 sec) [ -14527.2065] [ 2432] [depth= 2] . ( 2 sec) [ -14478.1189] [ 2425] [depth= 1] . ( 2 sec) [ -14371.8078] [ 2410] [depth= 11] . ( 2 sec) [ -14241.9205] [ 2393] [depth= 2] . ( 3 sec) [ -14182.0960] [ 2380] [depth= 1] . ( 3 sec) [ -14163.1994] [ 2302] [depth= 9] . ( 3 sec) [ -14158.6256] [ 2448] [depth= 1] . ( 3 sec) [ -14154.3882] [ 2450] [depth= 2] . ( 3 sec) [ -13842.4600] [ 2293] [depth= 2] . ( 3 sec) [ -13816.1530] [ 2271] [depth= 1] . ( 3 sec) [ -13720.2680] [ 2236] [depth= 3] . ( 3 sec) [ -13665.4543] [ 2204] [depth= 3] . ( 3 sec) [ -11653.5645] [ 2191] [depth= 3] . ( 3 sec) [ -11621.9616] [ 2178] [depth= 1] . ( 3 sec) [ -11603.5770] [ 2172] [depth= 1] . ( 3 sec) [ -11576.6988] [ 2165] [depth= 1] . ( 3 sec) [ -9475.0794] [ 2083] [depth= 3] . ( 3 sec) [ -9474.0827] [ 2086] [depth= 1] . ( 3 sec) [ -9218.4690] [ 1991] [depth= 6] . ( 3 sec) [ -9032.9440] [ 1996] [depth= 2] . ( 3 sec) [ -8906.0983] [ 1962] [depth= 3] . ( 3 sec) [ -8904.6509] [ 1943] [depth= 1] . ( 3 sec) [ -8869.8609] [ 1949] [depth= 1] . ( 3 sec) [ -8783.0699] [ 1914] [depth= 3] . ( 4 sec) [ -8732.5168] [ 1884] [depth= 3] . ( 4 sec) [ -8702.9596] [ 1876] [depth= 2] . ( 4 sec) [ -8682.2330] [ 1873] [depth= 1] . ( 4 sec) [ -8635.1065] [ 1860] [depth= 2] . ( 4 sec) [ -8613.8101] [ 1812] [depth= 4] . ( 4 sec) [ -8486.8140] [ 1755] [depth= 1] . ( 4 sec) [ -8486.0597] [ 1759] [depth= 1] . ( 4 sec) [ -8478.4106] [ 1762] [depth= 1] . ( 4 sec) [ -8477.5835] [ 1757] [depth= 1] . ( 4 sec) [ -8338.1369] [Branch lengths ] . ( 5 sec) [ -8336.1031] [GTR parameters ] . ( 5 sec) [ -8314.0371] [Alpha ][ 0.826447] . ( 5 sec) [ -8257.7333] [ 1716] [depth= 1] . ( 5 sec) [ -8245.7018] [ 1726] [depth= 1] . ( 5 sec) [ -8223.9401] [ 1716] [depth= 1] . ( 5 sec) [ -8220.9560] [ 1715] [depth= 1] . ( 5 sec) [ -8206.6548] [ 1710] [depth= 1] . ( 5 sec) [ -8205.1804] [ 1706] [depth= 1] . ( 6 sec) [ -8190.0616] [ 1692] [depth= 1] . ( 6 sec) [ -8189.2330] [ 1694] [depth= 1] . ( 6 sec) [ -8189.0096] [ 1696] [depth= 1] . ( 6 sec) [ -8188.9127] [ 1699] [depth= 1] . ( 6 sec) [ -8185.6186] [ 1693] [depth= 1] . ( 7 sec) [ -8184.6061] [ 1689] [depth= 1] . ( 7 sec) [ -8182.7364] [ 1690] [depth= 1] . ( 7 sec) [ -8182.3739] [ 1693] [depth= 1] . ( 8 sec) [ -8170.3063] [Branch lengths ] . ( 8 sec) [ -8170.2299] [GTR parameters ] . ( 8 sec) [ -8169.5566] [Alpha ][ 0.904211] . ( 10 sec) [ -8168.3890] [ 1690] [depth= 1] . ( 11 sec) [ -8167.3853] [Branch lengths ] . ( 11 sec) [ -8167.3713] [GTR parameters ] . ( 12 sec) [ -8167.3543] [Alpha ][ 0.917560] . ( 14 sec) [ -8167.1466] [Branch lengths ] . ( 33 sec) [ -8167.1169] [Branch lengths ] . ( 34 sec) [ -8167.1169] [Topology ] . ( 34 sec) [ -8167.1138] [Topology ] . ( 35 sec) [ -8167.1127] [Topology ] . ( 36 sec) [ -8167.1121] [Topology ] . ( 36 sec) [ -8167.1118] [GTR parameters ] . ( 36 sec) [ -8167.1088] [Alpha ][ 0.923128] . ( 36 sec) [ -8167.1088] [Topology ] . ( 37 sec) [ -8167.1082] [Topology ] . ( 37 sec) [ -8167.1082] [GTR parameters ] . ( 37 sec) [ -8167.1082] [Alpha ][ 0.923128] . Checking for NNIs, optimizing five branches... . ( 43 sec) [ -8167.0943] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8167.094305. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -22373.5228] [GTR parameters ] . ( 1 sec) [ -21984.5751] [Alpha ][ 0.500960] . ( 1 sec) [ -21757.0431] [ 3996] [depth= 8] . ( 1 sec) [ -21193.4420] [ 3853] [depth= 9] . ( 1 sec) [ -21061.8286] [ 3807] [depth= 8] . ( 1 sec) [ -21024.0932] [ 3728] [depth= 1] . ( 1 sec) [ -20973.7840] [ 3716] [depth= 9] . ( 1 sec) [ -20847.1856] [ 3695] [depth= 3] . ( 2 sec) [ -20235.1220] [ 3685] [depth= 4] . ( 2 sec) [ -20079.9332] [ 3638] [depth= 5] . ( 2 sec) [ -20034.9545] [ 3633] [depth= 1] . ( 2 sec) [ -19990.1582] [ 3626] [depth= 4] . ( 2 sec) [ -17143.9615] [ 3621] [depth= 9] . ( 2 sec) [ -16971.4316] [ 3577] [depth= 3] . ( 2 sec) [ -15290.1577] [ 3500] [depth= 6] . ( 2 sec) [ -14982.5807] [ 3428] [depth= 15] . ( 2 sec) [ -14836.5910] [ 3406] [depth= 11] . ( 2 sec) [ -14640.6828] [ 3285] [depth= 10] . ( 2 sec) [ -14465.7308] [ 3323] [depth= 8] . ( 2 sec) [ -14415.1914] [ 3307] [depth= 9] . ( 2 sec) [ -14314.5754] [ 3274] [depth= 8] . ( 2 sec) [ -14209.9708] [ 3227] [depth= 14] . ( 2 sec) [ -13647.1191] [ 3226] [depth= 1] . ( 2 sec) [ -13215.9126] [ 3207] [depth= 16] . ( 2 sec) [ -12921.4690] [ 3095] [depth= 14] . ( 2 sec) [ -12788.6430] [ 2968] [depth= 5] . ( 2 sec) [ -12615.3677] [ 2949] [depth= 6] . ( 2 sec) [ -12459.6226] [ 2913] [depth= 5] . ( 2 sec) [ -12456.1546] [ 2921] [depth= 1] . ( 2 sec) [ -12191.2328] [ 2830] [depth= 6] . ( 2 sec) [ -11980.3183] [ 2764] [depth= 15] . ( 3 sec) [ -11942.7218] [ 2737] [depth= 1] . ( 3 sec) [ -11632.4015] [ 2615] [depth= 10] . ( 3 sec) [ -11631.0802] [ 2623] [depth= 1] . ( 3 sec) [ -11615.4477] [ 2613] [depth= 1] . ( 3 sec) [ -11593.4384] [ 2605] [depth= 1] . ( 3 sec) [ -11313.0922] [ 2534] [depth= 1] . ( 3 sec) [ -11238.2818] [ 2519] [depth= 10] . ( 3 sec) [ -11227.9895] [ 2516] [depth= 1] . ( 3 sec) [ -11078.0808] [ 2514] [depth= 2] . ( 3 sec) [ -10726.6617] [ 2463] [depth= 3] . ( 3 sec) [ -10664.3016] [ 2453] [depth= 3] . ( 3 sec) [ -10602.2773] [ 2443] [depth= 9] . ( 3 sec) [ -10577.9240] [ 2443] [depth= 1] . ( 3 sec) [ -10575.3791] [ 2443] [depth= 1] . ( 3 sec) [ -10408.7811] [ 2409] [depth= 4] . ( 3 sec) [ -10380.3758] [ 2402] [depth= 1] . ( 3 sec) [ -10360.6394] [ 2395] [depth= 3] . ( 3 sec) [ -10259.4205] [ 2331] [depth= 2] . ( 3 sec) [ -10228.1811] [ 2323] [depth= 1] . ( 3 sec) [ -10227.2738] [ 2320] [depth= 1] . ( 3 sec) [ -10204.9726] [ 2312] [depth= 1] . ( 3 sec) [ -9968.8900] [ 2243] [depth= 1] . ( 4 sec) [ -9772.3337] [ 2191] [depth= 8] . ( 4 sec) [ -9573.8777] [ 2066] [depth= 7] . ( 4 sec) [ -9538.7297] [ 2087] [depth= 2] . ( 4 sec) [ -9397.4979] [ 2020] [depth= 5] . ( 4 sec) [ -9364.9166] [ 2008] [depth= 1] . ( 4 sec) [ -9316.7344] [ 1997] [depth= 3] . ( 4 sec) [ -9316.6808] [ 1986] [depth= 1] . ( 4 sec) [ -9306.3122] [ 1984] [depth= 1] . ( 4 sec) [ -9299.7252] [ 1980] [depth= 1] . ( 4 sec) [ -9297.0281] [ 1985] [depth= 1] . ( 4 sec) [ -9243.0125] [ 1958] [depth= 3] . ( 4 sec) [ -9020.9847] [ 1903] [depth= 2] . ( 4 sec) [ -8957.6805] [ 1878] [depth= 1] . ( 4 sec) [ -8819.5430] [ 1816] [depth= 3] . ( 4 sec) [ -8812.7089] [ 1805] [depth= 1] . ( 4 sec) [ -8522.9115] [ 1799] [depth= 3] . ( 4 sec) [ -8505.7879] [ 1787] [depth= 1] . ( 4 sec) [ -8485.3170] [ 1756] [depth= 5] . ( 4 sec) [ -8472.4058] [ 1751] [depth= 1] . ( 4 sec) [ -8456.6467] [ 1744] [depth= 1] . ( 5 sec) [ -8429.8022] [ 1739] [depth= 1] . ( 5 sec) [ -8421.3411] [ 1742] [depth= 1] . ( 5 sec) [ -8345.5047] [ 1741] [depth= 3] . ( 5 sec) [ -8341.6129] [ 1751] [depth= 1] . ( 5 sec) [ -8340.8378] [ 1756] [depth= 1] . ( 5 sec) [ -8279.5739] [Branch lengths ] . ( 6 sec) [ -8277.9865] [GTR parameters ] . ( 6 sec) [ -8256.4109] [Alpha ][ 0.819377] . ( 6 sec) [ -8254.5797] [ 1751] [depth= 1] . ( 6 sec) [ -8246.4193] [ 1736] [depth= 1] . ( 6 sec) [ -8243.8315] [ 1737] [depth= 1] . ( 6 sec) [ -8242.8451] [ 1739] [depth= 1] . ( 6 sec) [ -8242.5125] [ 1740] [depth= 1] . ( 6 sec) [ -8241.2048] [ 1738] [depth= 1] . ( 6 sec) [ -8239.7073] [ 1735] [depth= 2] . ( 7 sec) [ -8237.9277] [ 1733] [depth= 1] . ( 7 sec) [ -8209.5345] [ 1692] [depth= 4] . ( 7 sec) [ -8208.8694] [ 1690] [depth= 2] . ( 8 sec) [ -8208.7451] [ 1701] [depth= 1] . ( 8 sec) [ -8205.8576] [ 1704] [depth= 1] . ( 8 sec) [ -8204.7927] [ 1693] [depth= 1] . ( 8 sec) [ -8201.3747] [ 1690] [depth= 1] . ( 9 sec) [ -8201.2838] [ 1692] [depth= 1] . ( 9 sec) [ -8179.2679] [Branch lengths ] . ( 9 sec) [ -8179.2451] [GTR parameters ] . ( 9 sec) [ -8178.5936] [Alpha ][ 0.894387] . ( 9 sec) [ -8177.6961] [ 1687] [depth= 1] . ( 9 sec) [ -8177.5597] [ 1690] [depth= 1] . ( 10 sec) [ -8177.1491] [ 1687] [depth= 1] . ( 12 sec) [ -8176.7412] [ 1690] [depth= 1] . ( 12 sec) [ -8172.1677] [Branch lengths ] . ( 12 sec) [ -8172.1603] [GTR parameters ] . ( 13 sec) [ -8172.1144] [Alpha ][ 0.915197] . ( 16 sec) [ -8170.8638] [Branch lengths ] . ( 24 sec) [ -8169.5917] [ 1697] [depth= 1] . ( 27 sec) [ -8169.1897] [ 1690] [depth= 1] . ( 34 sec) [ -8167.2838] [Branch lengths ] . ( 35 sec) [ -8167.2708] [GTR parameters ] . ( 35 sec) [ -8167.2648] [Alpha ][ 0.923107] . ( 54 sec) [ -8167.1156] [Branch lengths ] . ( 54 sec) [ -8167.1156] [Topology ] . ( 55 sec) [ -8167.1097] [Topology ] . ( 56 sec) [ -8167.1084] [Topology ] . ( 56 sec) [ -8167.1081] [Topology ] . ( 57 sec) [ -8167.1078] [GTR parameters ] . ( 57 sec) [ -8167.1078] [Alpha ][ 0.924030] . ( 57 sec) [ -8167.1078] [Topology ] . ( 57 sec) [ -8167.1077] [Topology ] . ( 58 sec) [ -8167.1076] [GTR parameters ] . ( 58 sec) [ -8167.1076] [Alpha ][ 0.924030] . Checking for NNIs, optimizing five branches... . ( 63 sec) [ -8167.0935] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8167.093484. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -20451.6259] [GTR parameters ] . ( 1 sec) [ -20067.2768] [Alpha ][ 0.500960] . ( 1 sec) [ -18815.0551] [ 3946] [depth= 6] . ( 1 sec) [ -18370.8224] [ 3802] [depth= 11] . ( 1 sec) [ -18323.4443] [ 3782] [depth= 5] . ( 1 sec) [ -18281.7545] [ 3782] [depth= 1] . ( 1 sec) [ -18252.7249] [ 3764] [depth= 2] . ( 1 sec) [ -18213.9447] [ 3772] [depth= 3] . ( 1 sec) [ -17846.2810] [ 3747] [depth= 6] . ( 1 sec) [ -17654.2983] [ 3635] [depth= 1] . ( 1 sec) [ -17426.9878] [ 3605] [depth= 7] . ( 1 sec) [ -17153.7183] [ 3520] [depth= 1] . ( 1 sec) [ -17011.2632] [ 3471] [depth= 7] . ( 1 sec) [ -16661.1909] [ 3363] [depth= 2] . ( 1 sec) [ -16619.2891] [ 3343] [depth= 9] . ( 1 sec) [ -16571.4244] [ 3333] [depth= 2] . ( 1 sec) [ -16451.8774] [ 3316] [depth= 1] . ( 1 sec) [ -16356.6030] [ 3279] [depth= 2] . ( 1 sec) [ -16215.8151] [ 3271] [depth= 5] . ( 1 sec) [ -16073.2985] [ 3224] [depth= 7] . ( 1 sec) [ -15193.5136] [ 3064] [depth= 15] . ( 1 sec) [ -15173.3680] [ 3057] [depth= 2] . ( 2 sec) [ -14825.0536] [ 2981] [depth= 11] . ( 2 sec) [ -14660.2358] [ 2934] [depth= 4] . ( 2 sec) [ -14655.5397] [ 2945] [depth= 1] . ( 2 sec) [ -14654.9030] [ 2934] [depth= 1] . ( 2 sec) [ -14497.1538] [ 2886] [depth= 3] . ( 2 sec) [ -14365.4352] [ 2864] [depth= 3] . ( 2 sec) [ -14305.0268] [ 2852] [depth= 6] . ( 2 sec) [ -14242.5989] [ 2821] [depth= 1] . ( 2 sec) [ -13947.8380] [ 2716] [depth= 9] . ( 2 sec) [ -13936.5707] [ 2687] [depth= 3] . ( 2 sec) [ -13858.6779] [ 2679] [depth= 3] . ( 2 sec) [ -13674.8363] [ 2670] [depth= 9] . ( 2 sec) [ -13510.8481] [ 2577] [depth= 1] . ( 2 sec) [ -13444.5775] [ 2544] [depth= 4] . ( 2 sec) [ -13259.7806] [ 2513] [depth= 4] . ( 2 sec) [ -11551.8676] [ 2518] [depth= 7] . ( 2 sec) [ -11546.8952] [ 2518] [depth= 1] . ( 2 sec) [ -11511.4621] [ 2502] [depth= 3] . ( 2 sec) [ -11425.1434] [ 2503] [depth= 11] . ( 2 sec) [ -11084.6579] [ 2417] [depth= 12] . ( 2 sec) [ -11073.7302] [ 2397] [depth= 4] . ( 3 sec) [ -10916.2487] [ 2341] [depth= 2] . ( 3 sec) [ -10408.9906] [ 2289] [depth= 9] . ( 3 sec) [ -10365.1330] [ 2253] [depth= 2] . ( 3 sec) [ -10174.5386] [ 2233] [depth= 4] . ( 3 sec) [ -10098.5549] [ 2208] [depth= 3] . ( 3 sec) [ -10097.2040] [ 2209] [depth= 1] . ( 3 sec) [ -10044.4089] [ 2164] [depth= 2] . ( 3 sec) [ -10036.2292] [ 2160] [depth= 1] . ( 3 sec) [ -9944.9419] [ 2120] [depth= 3] . ( 3 sec) [ -9932.6918] [ 2091] [depth= 1] . ( 3 sec) [ -9877.6477] [ 2066] [depth= 1] . ( 3 sec) [ -9850.3422] [ 2063] [depth= 2] . ( 3 sec) [ -9838.7397] [ 2061] [depth= 1] . ( 3 sec) [ -9811.9973] [ 2071] [depth= 1] . ( 3 sec) [ -9802.6676] [ 2061] [depth= 1] . ( 3 sec) [ -9771.6788] [ 2048] [depth= 1] . ( 3 sec) [ -9759.4481] [ 2042] [depth= 1] . ( 3 sec) [ -9750.3475] [ 2048] [depth= 1] . ( 3 sec) [ -9698.0065] [ 2051] [depth= 1] . ( 3 sec) [ -9521.1342] [ 1986] [depth= 6] . ( 3 sec) [ -9472.1501] [ 1994] [depth= 1] . ( 4 sec) [ -9314.4783] [ 1982] [depth= 2] . ( 4 sec) [ -9289.8103] [ 1977] [depth= 2] . ( 4 sec) [ -8895.2916] [ 1835] [depth= 8] . ( 4 sec) [ -8891.5501] [ 1830] [depth= 1] . ( 4 sec) [ -8889.5095] [ 1826] [depth= 1] . ( 4 sec) [ -8872.3295] [ 1830] [depth= 1] . ( 4 sec) [ -8803.7658] [ 1807] [depth= 3] . ( 4 sec) [ -8726.2834] [ 1749] [depth= 1] . ( 4 sec) [ -8593.3589] [ 1750] [depth= 1] . ( 4 sec) [ -8461.6189] [ 1748] [depth= 2] . ( 4 sec) [ -8390.5078] [ 1748] [depth= 3] . ( 4 sec) [ -8272.5978] [Branch lengths ] . ( 5 sec) [ -8271.4323] [GTR parameters ] . ( 5 sec) [ -8251.4026] [Alpha ][ 0.808036] . ( 5 sec) [ -8247.5215] [ 1745] [depth= 1] . ( 5 sec) [ -8239.6467] [ 1730] [depth= 1] . ( 5 sec) [ -8231.8899] [ 1723] [depth= 1] . ( 6 sec) [ -8229.8395] [ 1725] [depth= 1] . ( 6 sec) [ -8229.6377] [ 1726] [depth= 1] . ( 6 sec) [ -8229.5745] [ 1726] [depth= 1] . ( 6 sec) [ -8228.1926] [ 1722] [depth= 1] . ( 6 sec) [ -8224.9863] [ 1720] [depth= 1] . ( 6 sec) [ -8224.8337] [ 1731] [depth= 1] . ( 6 sec) [ -8224.4734] [ 1726] [depth= 2] . ( 6 sec) [ -8220.4174] [ 1716] [depth= 1] . ( 6 sec) [ -8220.0673] [ 1717] [depth= 1] . ( 6 sec) [ -8219.7397] [ 1716] [depth= 1] . ( 7 sec) [ -8218.9965] [ 1705] [depth= 1] . ( 7 sec) [ -8189.4786] [ 1688] [depth= 1] . ( 8 sec) [ -8188.8531] [ 1693] [depth= 1] . ( 8 sec) [ -8186.3097] [ 1692] [depth= 1] . ( 8 sec) [ -8185.2102] [ 1690] [depth= 1] . ( 8 sec) [ -8170.7770] [Branch lengths ] . ( 9 sec) [ -8170.6553] [GTR parameters ] . ( 9 sec) [ -8169.6159] [Alpha ][ 0.903596] . ( 9 sec) [ -8169.5341] [ 1692] [depth= 1] . ( 9 sec) [ -8169.0187] [ 1687] [depth= 1] . ( 11 sec) [ -8168.9764] [ 1690] [depth= 1] . ( 12 sec) [ -8167.5157] [Branch lengths ] . ( 12 sec) [ -8167.5135] [GTR parameters ] . ( 12 sec) [ -8167.4956] [Alpha ][ 0.917269] . ( 15 sec) [ -8167.1791] [Branch lengths ] . ( 34 sec) [ -8167.1219] [Branch lengths ] . ( 34 sec) [ -8167.1219] [Topology ] . ( 35 sec) [ -8167.1160] [Topology ] . ( 36 sec) [ -8167.1140] [Topology ] . ( 37 sec) [ -8167.1130] [Topology ] . ( 37 sec) [ -8167.1124] [Topology ] . ( 38 sec) [ -8167.1120] [GTR parameters ] . ( 38 sec) [ -8167.1087] [Alpha ][ 0.923123] . ( 38 sec) [ -8167.1087] [Topology ] . ( 38 sec) [ -8167.1081] [Topology ] . ( 39 sec) [ -8167.1081] [GTR parameters ] . ( 39 sec) [ -8167.1081] [Alpha ][ 0.923123] . Checking for NNIs, optimizing five branches... . ( 44 sec) [ -8167.0944] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8167.094435. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-8223.651307 . ( 1 sec) [ -8220.1928] [GTR parameters ] . ( 1 sec) [ -8219.3015] [Alpha ][ 0.896853] . ( 1 sec) [ -8219.3015] [Topology ] . ( 1 sec) [ -8175.9036] [Topology ] . ( 2 sec) [ -8170.0695] [Topology ] . ( 3 sec) [ -8168.4675] [Topology ] . ( 4 sec) [ -8167.8102] [Topology ] . ( 4 sec) [ -8167.5141] [Topology ] . ( 5 sec) [ -8167.3714] [Topology ] . ( 6 sec) [ -8167.3002] [Topology ] . Checking for NNIs, optimizing five branches... . ( 11 sec) [ -8167.2928] [Topology ] . Before opt ts/t=1.000000 LK=-8167.292832 . ( 12 sec) [ -8167.2502] [GTR parameters ] . ( 12 sec) [ -8167.2005] [Alpha ][ 0.918662] . ( 12 sec) [ -8167.2005] [Topology ] . ( 13 sec) [ -8167.1537] [Topology ] . ( 13 sec) [ -8167.1320] [Topology ] . ( 14 sec) [ -8167.1213] [Topology ] . ( 15 sec) [ -8167.1158] [Topology ] . ( 16 sec) [ -8167.1131] [Topology ] . ( 16 sec) [ -8167.1116] [Topology ] . Checking for NNIs, optimizing five branches... . ( 22 sec) [ -8167.1003] [Topology ] . Before opt ts/t=1.000000 LK=-8167.100340 . ( 22 sec) [ -8167.0984] [GTR parameters ] . ( 22 sec) [ -8167.0946] [Alpha ][ 0.925005] . ( 22 sec) [ -8167.0946] [Topology ] . ( 23 sec) [ -8167.0901] [Topology ] . ( 24 sec) [ -8167.0892] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-8167.089155 . ( 29 sec) [ -8167.0892] [GTR parameters ] . ( 29 sec) [ -8167.0891] [Alpha ][ 0.925930] . ( 29 sec) [ -8167.0891] [Topology ] . ( 30 sec) [ -8167.0887] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 41 sec) [ -8220.1928] [GTR parameters ] . ( 41 sec) [ -8219.3015] [Alpha ][ 0.896853] . ( 42 sec) [ -8215.3168] [ 1703] [depth= 1] . ( 42 sec) [ -8215.0859] [ 1706] [depth= 1] . ( 42 sec) [ -8211.6814] [ 1705] [depth= 1] . ( 42 sec) [ -8207.8637] [ 1708] [depth= 1] . ( 42 sec) [ -8206.1045] [ 1705] [depth= 1] . ( 43 sec) [ -8204.4330] [ 1705] [depth= 1] . ( 43 sec) [ -8200.7552] [ 1705] [depth= 1] . ( 43 sec) [ -8196.4679] [ 1705] [depth= 1] . ( 43 sec) [ -8194.7076] [ 1701] [depth= 1] . ( 43 sec) [ -8194.3972] [ 1705] [depth= 1] . ( 43 sec) [ -8193.6413] [ 1701] [depth= 1] . ( 44 sec) [ -8192.2892] [ 1701] [depth= 1] . ( 44 sec) [ -8191.2104] [ 1701] [depth= 1] . ( 45 sec) [ -8170.0561] [Branch lengths ] . ( 45 sec) [ -8170.0112] [GTR parameters ] . ( 45 sec) [ -8169.9955] [Alpha ][ 0.909592] . ( 45 sec) [ -8168.8160] [ 1690] [depth= 1] . ( 48 sec) [ -8167.4907] [Branch lengths ] . ( 48 sec) [ -8167.4844] [GTR parameters ] . ( 48 sec) [ -8167.4782] [Alpha ][ 0.917576] . ( 51 sec) [ -8167.1703] [Branch lengths ] . ( 70 sec) [ -8167.1212] [Branch lengths ] . ( 70 sec) [ -8167.1212] [Topology ] . ( 71 sec) [ -8167.1157] [Topology ] . ( 72 sec) [ -8167.1136] [Topology ] . ( 73 sec) [ -8167.1125] [Topology ] . ( 74 sec) [ -8167.1120] [Topology ] . ( 74 sec) [ -8167.1116] [GTR parameters ] . ( 74 sec) [ -8167.1086] [Alpha ][ 0.923178] . ( 74 sec) [ -8167.1086] [Topology ] . ( 75 sec) [ -8167.1080] [Topology ] . ( 75 sec) [ -8167.1080] [GTR parameters ] . ( 75 sec) [ -8167.1080] [Alpha ][ 0.923178] . Checking for NNIs, optimizing five branches... . ( 80 sec) [ -8167.0943] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -8167.088697 . Log likelihood obtained after SPR moves : -8167.094262 . Log likelihood of the current tree: -8167.088697. . Printing the most likely tree in file 'data62.phy_phyml_tree.txt'... . Best log likelihood : -8167.088697 . Time used 0h1m26s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo