.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : data72.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : Best of NNIs and SPRs . Starting tree : BioNJ . Add random input tree : yes . Number of random starting trees : 5 . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 341 patterns found. (out of a total of 500 sites) . 144 sites without polymorphism (28.80%). . [Random start 1/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . This analysis requires at least 7Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -13777.5302] [GTR parameters ] . ( 1 sec) [ -13494.5222] [Alpha ][ 0.500960] . ( 1 sec) [ -13247.6615] [ 2507] [depth= 4] . ( 1 sec) [ -13026.1396] [ 2461] [depth= 6] . ( 1 sec) [ -12938.3109] [ 2461] [depth= 2] . ( 1 sec) [ -12934.4571] [ 2462] [depth= 1] . ( 2 sec) [ -12874.2670] [ 2455] [depth= 5] . ( 2 sec) [ -12867.2934] [ 2455] [depth= 1] . ( 2 sec) [ -12850.9649] [ 2451] [depth= 1] . ( 2 sec) [ -12441.2070] [ 2444] [depth= 8] . ( 2 sec) [ -12247.4724] [ 2428] [depth= 9] . ( 2 sec) [ -12024.2939] [ 2342] [depth= 8] . ( 2 sec) [ -11748.2077] [ 2330] [depth= 11] . ( 2 sec) [ -11686.8222] [ 2311] [depth= 2] . ( 2 sec) [ -11626.4459] [ 2307] [depth= 4] . ( 2 sec) [ -11552.2530] [ 2266] [depth= 1] . ( 2 sec) [ -11492.4434] [ 2261] [depth= 3] . ( 2 sec) [ -11397.4381] [ 2228] [depth= 5] . ( 2 sec) [ -11336.0060] [ 2228] [depth= 1] . ( 2 sec) [ -11328.0490] [ 2224] [depth= 1] . ( 2 sec) [ -11314.0283] [ 2223] [depth= 1] . ( 2 sec) [ -11132.3725] [ 2185] [depth= 2] . ( 2 sec) [ -10921.7953] [ 2183] [depth= 11] . ( 2 sec) [ -10866.6304] [ 2182] [depth= 1] . ( 3 sec) [ -10714.5847] [ 2172] [depth= 11] . ( 3 sec) [ -10622.6706] [ 2111] [depth= 11] . ( 3 sec) [ -10399.8699] [ 2081] [depth= 1] . ( 3 sec) [ -10082.2629] [ 2041] [depth= 1] . ( 3 sec) [ -9983.5134] [ 2019] [depth= 12] . ( 3 sec) [ -9683.2432] [ 1906] [depth= 5] . ( 3 sec) [ -9370.6861] [ 1842] [depth= 7] . ( 3 sec) [ -9128.4837] [ 1799] [depth= 3] . ( 3 sec) [ -9002.0674] [ 1798] [depth= 1] . ( 3 sec) [ -8937.7296] [ 1770] [depth= 1] . ( 3 sec) [ -8869.1898] [ 1762] [depth= 8] . ( 3 sec) [ -8834.8521] [ 1755] [depth= 6] . ( 3 sec) [ -8704.1966] [ 1733] [depth= 8] . ( 3 sec) [ -8700.3558] [ 1733] [depth= 1] . ( 3 sec) [ -8674.6357] [ 1739] [depth= 14] . ( 4 sec) [ -8569.2799] [ 1736] [depth= 2] . ( 4 sec) [ -8562.6243] [ 1736] [depth= 1] . ( 4 sec) [ -8481.9086] [ 1719] [depth= 2] . ( 4 sec) [ -8416.4997] [ 1709] [depth= 6] . ( 4 sec) [ -8343.2504] [ 1675] [depth= 4] . ( 4 sec) [ -8301.9238] [ 1659] [depth= 6] . ( 4 sec) [ -8278.4983] [ 1658] [depth= 6] . ( 4 sec) [ -8275.4729] [ 1656] [depth= 1] . ( 4 sec) [ -8229.0756] [ 1644] [depth= 2] . ( 4 sec) [ -8186.4165] [ 1637] [depth= 4] . ( 4 sec) [ -7890.7295] [ 1571] [depth= 2] . ( 4 sec) [ -7876.1932] [ 1571] [depth= 1] . ( 4 sec) [ -7797.3767] [ 1558] [depth= 5] . ( 4 sec) [ -7715.8481] [ 1535] [depth= 1] . ( 4 sec) [ -7643.5688] [ 1537] [depth= 1] . ( 4 sec) [ -7642.0745] [ 1535] [depth= 1] . ( 4 sec) [ -7520.3653] [ 1527] [depth= 1] . ( 4 sec) [ -7519.5638] [ 1527] [depth= 1] . ( 4 sec) [ -7369.5189] [ 1466] [depth= 2] . ( 4 sec) [ -7308.1522] [ 1451] [depth= 2] . ( 5 sec) [ -7100.3514] [ 1406] [depth= 4] . ( 5 sec) [ -7051.3568] [ 1383] [depth= 1] . ( 5 sec) [ -7037.7633] [ 1382] [depth= 1] . ( 5 sec) [ -7036.4923] [ 1380] [depth= 1] . ( 5 sec) [ -7010.5115] [ 1370] [depth= 1] . ( 5 sec) [ -6953.2568] [ 1359] [depth= 6] . ( 5 sec) [ -6919.2294] [ 1332] [depth= 1] . ( 5 sec) [ -6913.6997] [ 1328] [depth= 3] . ( 5 sec) [ -6835.1624] [ 1282] [depth= 1] . ( 5 sec) [ -6779.4409] [ 1278] [depth= 2] . ( 5 sec) [ -6708.7336] [ 1277] [depth= 3] . ( 5 sec) [ -6685.3097] [ 1271] [depth= 2] . ( 5 sec) [ -6680.1072] [ 1280] [depth= 1] . ( 5 sec) [ -6632.0681] [ 1275] [depth= 3] . ( 5 sec) [ -6597.5637] [ 1267] [depth= 2] . ( 5 sec) [ -6565.1688] [ 1260] [depth= 2] . ( 5 sec) [ -6530.5912] [ 1246] [depth= 1] . ( 5 sec) [ -6515.4898] [ 1240] [depth= 2] . ( 5 sec) [ -6509.6859] [ 1225] [depth= 3] . ( 5 sec) [ -6495.0526] [ 1226] [depth= 1] . ( 5 sec) [ -6480.3283] [ 1224] [depth= 2] . ( 5 sec) [ -6386.3881] [ 1202] [depth= 1] . ( 5 sec) [ -6301.2592] [ 1190] [depth= 2] . ( 6 sec) [ -6279.4081] [ 1184] [depth= 2] . ( 6 sec) [ -6277.8865] [ 1180] [depth= 1] . ( 6 sec) [ -6269.9232] [ 1187] [depth= 1] . ( 6 sec) [ -6207.8400] [ 1161] [depth= 2] . ( 6 sec) [ -6175.3220] [ 1157] [depth= 3] . ( 6 sec) [ -6101.9817] [Branch lengths ] . ( 6 sec) [ -6101.6637] [GTR parameters ] . ( 6 sec) [ -6091.1196] [Alpha ][ 0.743233] . ( 6 sec) [ -6048.3483] [ 1123] [depth= 4] . ( 7 sec) [ -6038.9653] [ 1123] [depth= 1] . ( 7 sec) [ -6013.7146] [ 1109] [depth= 1] . ( 7 sec) [ -5798.6110] [ 1036] [depth= 4] . ( 7 sec) [ -5790.5692] [ 1036] [depth= 2] . ( 7 sec) [ -5772.5808] [ 1027] [depth= 1] . ( 7 sec) [ -5768.7903] [ 1026] [depth= 1] . ( 7 sec) [ -5767.5814] [ 1026] [depth= 2] . ( 7 sec) [ -5767.4522] [ 1028] [depth= 1] . ( 7 sec) [ -5754.2374] [ 998] [depth= 2] . ( 8 sec) [ -5718.1033] [ 995] [depth= 1] . ( 8 sec) [ -5717.6395] [ 997] [depth= 1] . ( 8 sec) [ -5716.4468] [ 995] [depth= 1] . ( 8 sec) [ -5712.5999] [ 996] [depth= 1] . ( 8 sec) [ -5683.0303] [ 983] [depth= 3] . ( 8 sec) [ -5681.8825] [ 982] [depth= 1] . ( 8 sec) [ -5679.6229] [ 986] [depth= 1] . ( 8 sec) [ -5679.0789] [ 982] [depth= 1] . ( 9 sec) [ -5678.3170] [ 984] [depth= 1] . ( 9 sec) [ -5674.7460] [ 983] [depth= 2] . ( 9 sec) [ -5673.2052] [ 982] [depth= 3] . ( 9 sec) [ -5672.9542] [ 986] [depth= 1] . ( 9 sec) [ -5672.6318] [ 987] [depth= 1] . ( 9 sec) [ -5670.3862] [ 989] [depth= 1] . ( 9 sec) [ -5667.7916] [ 990] [depth= 2] . ( 10 sec) [ -5667.2264] [ 989] [depth= 1] . ( 10 sec) [ -5660.1846] [Branch lengths ] . ( 11 sec) [ -5659.9251] [GTR parameters ] . ( 11 sec) [ -5655.6219] [Alpha ][ 0.998754] . ( 12 sec) [ -5655.1536] [ 985] [depth= 1] . ( 13 sec) [ -5654.5155] [ 981] [depth= 1] . ( 15 sec) [ -5654.4639] [ 981] [depth= 1] . ( 16 sec) [ -5653.2172] [Branch lengths ] . ( 17 sec) [ -5653.2052] [GTR parameters ] . ( 17 sec) [ -5653.1970] [Alpha ][ 1.012588] . ( 23 sec) [ -5651.2530] [Branch lengths ] . ( 48 sec) [ -5650.5853] [Branch lengths ] . ( 48 sec) [ -5650.5853] [Topology ] . ( 49 sec) [ -5650.5742] [Topology ] . ( 49 sec) [ -5650.5735] [Topology ] . ( 50 sec) [ -5650.5635] [GTR parameters ] . ( 50 sec) [ -5650.5632] [Alpha ][ 1.015433] . ( 50 sec) [ -5650.5632] [Topology ] . ( 51 sec) [ -5650.5631] [Topology ] . ( 51 sec) [ -5650.5631] [GTR parameters ] . ( 51 sec) [ -5650.5631] [Alpha ][ 1.015433] . Checking for NNIs, optimizing five branches... . ( 57 sec) [ -5650.5262] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5650.526205. . [Random start 2/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -14906.9616] [GTR parameters ] . ( 2 sec) [ -14594.1224] [Alpha ][ 0.500960] . ( 3 sec) [ -14260.7072] [ 2636] [depth= 4] . ( 3 sec) [ -13880.6476] [ 2598] [depth= 3] . ( 3 sec) [ -13794.5097] [ 2571] [depth= 1] . ( 3 sec) [ -13763.8528] [ 2566] [depth= 2] . ( 3 sec) [ -13574.0396] [ 2519] [depth= 6] . ( 3 sec) [ -13334.0355] [ 2512] [depth= 4] . ( 3 sec) [ -12931.8071] [ 2509] [depth= 4] . ( 3 sec) [ -12578.9531] [ 2459] [depth= 1] . ( 3 sec) [ -12499.6775] [ 2453] [depth= 2] . ( 3 sec) [ -12425.3904] [ 2432] [depth= 9] . ( 3 sec) [ -12362.7803] [ 2426] [depth= 2] . ( 3 sec) [ -12305.1221] [ 2391] [depth= 2] . ( 3 sec) [ -12201.0702] [ 2384] [depth= 3] . ( 3 sec) [ -11798.2968] [ 2323] [depth= 12] . ( 4 sec) [ -11518.6248] [ 2254] [depth= 16] . ( 4 sec) [ -11416.5197] [ 2225] [depth= 1] . ( 4 sec) [ -11101.6787] [ 2163] [depth= 12] . ( 4 sec) [ -10648.7208] [ 2099] [depth= 2] . ( 4 sec) [ -10510.9849] [ 2099] [depth= 1] . ( 4 sec) [ -10440.9469] [ 2007] [depth= 2] . ( 4 sec) [ -10209.0764] [ 1977] [depth= 12] . ( 4 sec) [ -10130.0521] [ 1963] [depth= 11] . ( 4 sec) [ -9691.2956] [ 1943] [depth= 10] . ( 4 sec) [ -9553.8198] [ 1917] [depth= 2] . ( 4 sec) [ -9530.0444] [ 1917] [depth= 1] . ( 4 sec) [ -9511.0336] [ 1917] [depth= 1] . ( 4 sec) [ -9358.2130] [ 1907] [depth= 11] . ( 4 sec) [ -9284.8367] [ 1873] [depth= 7] . ( 4 sec) [ -9125.0444] [ 1867] [depth= 3] . ( 5 sec) [ -9097.9602] [ 1829] [depth= 1] . ( 5 sec) [ -9031.6235] [ 1805] [depth= 2] . ( 5 sec) [ -8937.6486] [ 1811] [depth= 12] . ( 5 sec) [ -8937.6139] [ 1812] [depth= 1] . ( 5 sec) [ -8834.9063] [ 1798] [depth= 2] . ( 5 sec) [ -8491.6459] [ 1800] [depth= 2] . ( 5 sec) [ -8477.1544] [ 1788] [depth= 3] . ( 5 sec) [ -8427.6908] [ 1740] [depth= 7] . ( 5 sec) [ -8244.9340] [ 1672] [depth= 3] . ( 5 sec) [ -8197.5979] [ 1619] [depth= 6] . ( 5 sec) [ -8185.6915] [ 1616] [depth= 1] . ( 5 sec) [ -7902.4209] [ 1555] [depth= 9] . ( 6 sec) [ -7870.3216] [ 1536] [depth= 2] . ( 6 sec) [ -7686.3873] [ 1539] [depth= 2] . ( 6 sec) [ -7678.3593] [ 1537] [depth= 1] . ( 6 sec) [ -7609.8675] [ 1516] [depth= 5] . ( 6 sec) [ -7604.4296] [ 1513] [depth= 1] . ( 6 sec) [ -7528.4449] [ 1437] [depth= 4] . ( 6 sec) [ -7353.7683] [ 1401] [depth= 5] . ( 6 sec) [ -7338.4390] [ 1397] [depth= 1] . ( 6 sec) [ -7180.6716] [ 1360] [depth= 4] . ( 6 sec) [ -7153.3429] [ 1326] [depth= 1] . ( 6 sec) [ -6876.7867] [ 1296] [depth= 1] . ( 6 sec) [ -6856.5200] [ 1289] [depth= 5] . ( 6 sec) [ -6816.5168] [ 1288] [depth= 1] . ( 6 sec) [ -6643.8187] [ 1217] [depth= 4] . ( 6 sec) [ -6576.3555] [ 1212] [depth= 1] . ( 7 sec) [ -6543.4286] [ 1212] [depth= 2] . ( 7 sec) [ -6469.5609] [ 1189] [depth= 1] . ( 7 sec) [ -6422.5339] [ 1170] [depth= 3] . ( 7 sec) [ -6330.8104] [ 1126] [depth= 5] . ( 7 sec) [ -6300.2808] [ 1123] [depth= 1] . ( 7 sec) [ -6103.3890] [ 1064] [depth= 2] . ( 7 sec) [ -6084.5130] [ 1063] [depth= 1] . ( 7 sec) [ -6040.1945] [ 1061] [depth= 1] . ( 8 sec) [ -5877.7753] [ 1026] [depth= 1] . ( 8 sec) [ -5847.7052] [ 1015] [depth= 2] . ( 8 sec) [ -5815.4015] [ 1006] [depth= 1] . ( 8 sec) [ -5801.9322] [ 1001] [depth= 1] . ( 8 sec) [ -5785.5763] [ 994] [depth= 1] . ( 8 sec) [ -5776.1064] [ 992] [depth= 1] . ( 8 sec) [ -5763.4803] [ 989] [depth= 1] . ( 8 sec) [ -5762.5762] [ 993] [depth= 1] . ( 8 sec) [ -5749.1993] [ 987] [depth= 1] . ( 9 sec) [ -5688.1734] [Branch lengths ] . ( 9 sec) [ -5687.0216] [GTR parameters ] . ( 9 sec) [ -5663.0943] [Alpha ][ 0.981962] . ( 10 sec) [ -5659.3830] [ 985] [depth= 1] . ( 10 sec) [ -5659.2691] [ 985] [depth= 1] . ( 10 sec) [ -5659.1177] [ 988] [depth= 1] . ( 11 sec) [ -5658.4721] [ 986] [depth= 1] . ( 12 sec) [ -5657.9446] [ 981] [depth= 1] . ( 12 sec) [ -5657.3470] [ 978] [depth= 1] . ( 12 sec) [ -5656.7880] [ 982] [depth= 3] . ( 12 sec) [ -5654.4740] [ 980] [depth= 3] . ( 15 sec) [ -5650.7522] [Branch lengths ] . ( 16 sec) [ -5650.7310] [GTR parameters ] . ( 16 sec) [ -5650.6961] [Alpha ][ 1.009430] . ( 22 sec) [ -5650.5351] [Branch lengths ] . ( 48 sec) [ -5650.5190] [Branch lengths ] . ( 48 sec) [ -5650.5190] [Topology ] . ( 49 sec) [ -5650.5180] [Topology ] . ( 50 sec) [ -5650.5180] [GTR parameters ] . ( 50 sec) [ -5650.5169] [Alpha ][ 1.014463] . ( 50 sec) [ -5650.5169] [Topology ] . ( 51 sec) [ -5650.5165] [Topology ] . ( 51 sec) [ -5650.5165] [GTR parameters ] . ( 51 sec) [ -5650.5165] [Alpha ][ 1.014463] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5650.516511. . [Random start 3/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16321.5258] [GTR parameters ] . ( 1 sec) [ -16032.4672] [Alpha ][ 0.500960] . ( 1 sec) [ -15936.7271] [ 2654] [depth= 1] . ( 2 sec) [ -15802.1706] [ 2617] [depth= 8] . ( 2 sec) [ -15578.2896] [ 2596] [depth= 3] . ( 2 sec) [ -15571.0895] [ 2596] [depth= 1] . ( 2 sec) [ -15504.8565] [ 2585] [depth= 4] . ( 2 sec) [ -15500.9222] [ 2584] [depth= 4] . ( 2 sec) [ -15346.4246] [ 2541] [depth= 15] . ( 2 sec) [ -15179.9883] [ 2529] [depth= 12] . ( 2 sec) [ -15021.3735] [ 2508] [depth= 1] . ( 2 sec) [ -14802.9690] [ 2450] [depth= 11] . ( 2 sec) [ -14679.4089] [ 2445] [depth= 8] . ( 2 sec) [ -14655.0844] [ 2444] [depth= 1] . ( 2 sec) [ -14430.6949] [ 2420] [depth= 9] . ( 2 sec) [ -14331.0510] [ 2422] [depth= 2] . ( 2 sec) [ -14231.5800] [ 2410] [depth= 10] . ( 2 sec) [ -14202.3399] [ 2366] [depth= 3] . ( 3 sec) [ -14133.1033] [ 2359] [depth= 2] . ( 3 sec) [ -13902.3126] [ 2320] [depth= 2] . ( 3 sec) [ -13811.2926] [ 2318] [depth= 1] . ( 3 sec) [ -11865.3590] [ 2231] [depth= 6] . ( 3 sec) [ -11536.4443] [ 2232] [depth= 1] . ( 3 sec) [ -11303.3411] [ 2223] [depth= 8] . ( 3 sec) [ -11109.7901] [ 2230] [depth= 6] . ( 3 sec) [ -11094.5142] [ 2228] [depth= 2] . ( 3 sec) [ -10775.2757] [ 2233] [depth= 1] . ( 3 sec) [ -10371.4482] [ 2152] [depth= 10] . ( 3 sec) [ -10312.2897] [ 2141] [depth= 9] . ( 3 sec) [ -10295.7065] [ 2139] [depth= 1] . ( 3 sec) [ -10029.8633] [ 2092] [depth= 8] . ( 3 sec) [ -9998.3606] [ 2066] [depth= 2] . ( 3 sec) [ -9685.3325] [ 2032] [depth= 3] . ( 3 sec) [ -9503.2802] [ 1988] [depth= 7] . ( 4 sec) [ -9155.9725] [ 1923] [depth= 7] . ( 4 sec) [ -9033.8169] [ 1883] [depth= 8] . ( 4 sec) [ -9031.0238] [ 1888] [depth= 1] . ( 4 sec) [ -8986.1569] [ 1886] [depth= 1] . ( 4 sec) [ -8962.7767] [ 1831] [depth= 2] . ( 4 sec) [ -8948.3431] [ 1823] [depth= 9] . ( 4 sec) [ -8940.9251] [ 1823] [depth= 1] . ( 4 sec) [ -8920.2292] [ 1823] [depth= 1] . ( 4 sec) [ -8735.9921] [ 1778] [depth= 11] . ( 4 sec) [ -8718.2153] [ 1767] [depth= 1] . ( 4 sec) [ -8464.2741] [ 1688] [depth= 3] . ( 4 sec) [ -8275.3886] [ 1676] [depth= 8] . ( 4 sec) [ -7821.2555] [ 1554] [depth= 2] . ( 5 sec) [ -7649.1601] [ 1556] [depth= 6] . ( 5 sec) [ -7383.8047] [ 1469] [depth= 5] . ( 5 sec) [ -7342.4930] [ 1441] [depth= 1] . ( 5 sec) [ -7326.6504] [ 1436] [depth= 1] . ( 5 sec) [ -7252.9347] [ 1399] [depth= 5] . ( 5 sec) [ -7222.3730] [ 1398] [depth= 1] . ( 5 sec) [ -7032.0115] [ 1387] [depth= 4] . ( 5 sec) [ -6896.7081] [ 1314] [depth= 5] . ( 5 sec) [ -6876.7450] [ 1307] [depth= 1] . ( 5 sec) [ -6811.1781] [ 1293] [depth= 8] . ( 5 sec) [ -6726.0911] [ 1288] [depth= 2] . ( 5 sec) [ -6693.9376] [ 1286] [depth= 1] . ( 5 sec) [ -6688.6688] [ 1286] [depth= 2] . ( 6 sec) [ -6674.9887] [ 1278] [depth= 2] . ( 6 sec) [ -6654.9128] [ 1274] [depth= 1] . ( 6 sec) [ -6591.1993] [ 1265] [depth= 1] . ( 6 sec) [ -6558.6540] [ 1256] [depth= 1] . ( 6 sec) [ -6551.4933] [ 1255] [depth= 2] . ( 6 sec) [ -6467.5955] [ 1204] [depth= 1] . ( 6 sec) [ -6465.2260] [ 1206] [depth= 1] . ( 6 sec) [ -6444.3726] [ 1205] [depth= 1] . ( 6 sec) [ -6390.3064] [ 1208] [depth= 1] . ( 6 sec) [ -6212.3430] [ 1164] [depth= 3] . ( 6 sec) [ -6211.3228] [ 1166] [depth= 1] . ( 6 sec) [ -6209.7534] [ 1167] [depth= 1] . ( 7 sec) [ -6206.6819] [ 1163] [depth= 1] . ( 7 sec) [ -6011.6423] [ 1100] [depth= 7] . ( 7 sec) [ -6009.7402] [ 1099] [depth= 1] . ( 7 sec) [ -6005.0793] [ 1097] [depth= 1] . ( 7 sec) [ -5996.5060] [ 1098] [depth= 2] . ( 7 sec) [ -5991.8497] [ 1097] [depth= 1] . ( 7 sec) [ -5973.9874] [ 1085] [depth= 1] . ( 7 sec) [ -5917.4316] [ 1046] [depth= 1] . ( 8 sec) [ -5893.3523] [ 1038] [depth= 1] . ( 8 sec) [ -5842.8456] [ 1034] [depth= 1] . ( 8 sec) [ -5839.0158] [ 1037] [depth= 2] . ( 8 sec) [ -5765.3308] [Branch lengths ] . ( 9 sec) [ -5764.1242] [GTR parameters ] . ( 9 sec) [ -5744.4315] [Alpha ][ 0.897391] . ( 9 sec) [ -5737.4237] [ 1028] [depth= 2] . ( 9 sec) [ -5729.9689] [ 1021] [depth= 1] . ( 9 sec) [ -5728.7496] [ 1022] [depth= 2] . ( 9 sec) [ -5715.6054] [ 1012] [depth= 1] . ( 9 sec) [ -5667.1172] [ 984] [depth= 1] . ( 10 sec) [ -5664.0362] [ 982] [depth= 1] . ( 10 sec) [ -5663.8918] [ 984] [depth= 2] . ( 10 sec) [ -5662.7305] [ 985] [depth= 1] . ( 10 sec) [ -5662.5630] [ 986] [depth= 1] . ( 11 sec) [ -5661.2360] [ 991] [depth= 1] . ( 11 sec) [ -5661.1315] [ 992] [depth= 1] . ( 11 sec) [ -5660.9316] [ 989] [depth= 2] . ( 11 sec) [ -5660.2893] [ 988] [depth= 1] . ( 11 sec) [ -5657.5414] [ 984] [depth= 2] . ( 12 sec) [ -5657.5175] [ 988] [depth= 1] . ( 12 sec) [ -5652.9403] [Branch lengths ] . ( 13 sec) [ -5652.8675] [GTR parameters ] . ( 13 sec) [ -5652.2713] [Alpha ][ 1.004453] . ( 13 sec) [ -5651.5022] [ 984] [depth= 1] . ( 14 sec) [ -5651.0383] [ 980] [depth= 1] . ( 16 sec) [ -5650.5869] [Branch lengths ] . ( 17 sec) [ -5650.5833] [GTR parameters ] . ( 17 sec) [ -5650.5791] [Alpha ][ 1.014326] . ( 20 sec) [ -5650.5644] [Branch lengths ] . ( 48 sec) [ -5650.5633] [Branch lengths ] . ( 48 sec) [ -5650.5633] [Topology ] . ( 49 sec) [ -5650.5632] [Topology ] . ( 49 sec) [ -5650.5632] [GTR parameters ] . ( 50 sec) [ -5650.5631] [Alpha ][ 1.015444] . Checking for NNIs, optimizing five branches... . ( 56 sec) [ -5650.5261] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5650.526090. . [Random start 4/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -14244.7099] [GTR parameters ] . ( 1 sec) [ -13940.2369] [Alpha ][ 0.500960] . ( 1 sec) [ -13688.7100] [ 2633] [depth= 11] . ( 1 sec) [ -13571.3288] [ 2599] [depth= 9] . ( 1 sec) [ -13118.7693] [ 2557] [depth= 2] . ( 1 sec) [ -13079.9533] [ 2522] [depth= 1] . ( 2 sec) [ -12861.4795] [ 2473] [depth= 5] . ( 2 sec) [ -12756.7789] [ 2468] [depth= 3] . ( 2 sec) [ -12507.5176] [ 2464] [depth= 6] . ( 2 sec) [ -12319.0456] [ 2406] [depth= 1] . ( 2 sec) [ -12065.1225] [ 2353] [depth= 8] . ( 2 sec) [ -11774.9823] [ 2296] [depth= 1] . ( 2 sec) [ -11525.8039] [ 2294] [depth= 4] . ( 2 sec) [ -11491.2855] [ 2286] [depth= 5] . ( 2 sec) [ -11433.2331] [ 2249] [depth= 8] . ( 2 sec) [ -11342.0751] [ 2248] [depth= 2] . ( 2 sec) [ -11089.4310] [ 2195] [depth= 5] . ( 2 sec) [ -10986.0801] [ 2197] [depth= 1] . ( 2 sec) [ -10927.0765] [ 2193] [depth= 13] . ( 2 sec) [ -10829.3469] [ 2193] [depth= 4] . ( 2 sec) [ -10516.3384] [ 2191] [depth= 4] . ( 2 sec) [ -10300.6860] [ 2123] [depth= 9] . ( 3 sec) [ -10284.2027] [ 2125] [depth= 1] . ( 3 sec) [ -10125.6257] [ 2042] [depth= 13] . ( 3 sec) [ -10091.2362] [ 2039] [depth= 14] . ( 3 sec) [ -9916.8273] [ 2036] [depth= 3] . ( 3 sec) [ -9636.5989] [ 2035] [depth= 1] . ( 3 sec) [ -9479.2665] [ 2034] [depth= 5] . ( 3 sec) [ -9451.5920] [ 2028] [depth= 3] . ( 3 sec) [ -9430.4274] [ 2017] [depth= 5] . ( 3 sec) [ -9428.6123] [ 2017] [depth= 1] . ( 3 sec) [ -9381.5401] [ 2008] [depth= 14] . ( 3 sec) [ -9339.6560] [ 2000] [depth= 2] . ( 3 sec) [ -9256.4217] [ 2004] [depth= 10] . ( 3 sec) [ -9025.4400] [ 1950] [depth= 9] . ( 3 sec) [ -8976.0943] [ 1951] [depth= 2] . ( 4 sec) [ -8794.4460] [ 1910] [depth= 7] . ( 4 sec) [ -8771.7095] [ 1901] [depth= 1] . ( 4 sec) [ -8713.5048] [ 1852] [depth= 11] . ( 4 sec) [ -8706.7118] [ 1844] [depth= 1] . ( 4 sec) [ -8677.7045] [ 1819] [depth= 3] . ( 4 sec) [ -8518.7092] [ 1765] [depth= 10] . ( 4 sec) [ -8358.5745] [ 1728] [depth= 6] . ( 4 sec) [ -8092.7163] [ 1651] [depth= 2] . ( 4 sec) [ -7755.1271] [ 1562] [depth= 16] . ( 4 sec) [ -7548.3020] [ 1545] [depth= 7] . ( 4 sec) [ -7527.1181] [ 1541] [depth= 1] . ( 4 sec) [ -7404.9094] [ 1518] [depth= 8] . ( 4 sec) [ -7339.3609] [ 1505] [depth= 13] . ( 4 sec) [ -7323.1551] [ 1503] [depth= 1] . ( 5 sec) [ -7286.4783] [ 1504] [depth= 1] . ( 5 sec) [ -7259.9137] [ 1494] [depth= 1] . ( 5 sec) [ -7115.2817] [ 1416] [depth= 1] . ( 5 sec) [ -7105.7330] [ 1404] [depth= 8] . ( 5 sec) [ -7062.2590] [ 1401] [depth= 1] . ( 5 sec) [ -7060.5801] [ 1399] [depth= 1] . ( 5 sec) [ -7029.7481] [ 1392] [depth= 1] . ( 5 sec) [ -6839.7655] [ 1330] [depth= 3] . ( 5 sec) [ -6817.7398] [ 1315] [depth= 1] . ( 5 sec) [ -6667.3784] [ 1273] [depth= 3] . ( 5 sec) [ -6591.4857] [ 1253] [depth= 2] . ( 5 sec) [ -6586.7706] [ 1253] [depth= 1] . ( 5 sec) [ -6568.1311] [ 1244] [depth= 1] . ( 5 sec) [ -6543.1846] [ 1242] [depth= 2] . ( 6 sec) [ -6537.4920] [ 1241] [depth= 1] . ( 6 sec) [ -6521.8076] [ 1203] [depth= 1] . ( 6 sec) [ -6519.8352] [ 1198] [depth= 1] . ( 6 sec) [ -6513.1308] [ 1195] [depth= 1] . ( 6 sec) [ -6496.4906] [ 1190] [depth= 1] . ( 6 sec) [ -6466.0016] [ 1201] [depth= 3] . ( 6 sec) [ -6282.0499] [ 1140] [depth= 7] . ( 6 sec) [ -6227.3730] [ 1127] [depth= 1] . ( 6 sec) [ -6181.1483] [ 1113] [depth= 3] . ( 6 sec) [ -6176.3901] [ 1108] [depth= 2] . ( 6 sec) [ -6061.1825] [ 1073] [depth= 1] . ( 6 sec) [ -6049.7258] [ 1072] [depth= 2] . ( 7 sec) [ -6047.8865] [ 1074] [depth= 1] . ( 7 sec) [ -6043.7668] [ 1074] [depth= 1] . ( 7 sec) [ -6040.9861] [ 1072] [depth= 1] . ( 7 sec) [ -6033.1013] [ 1070] [depth= 1] . ( 7 sec) [ -6014.9442] [ 1058] [depth= 3] . ( 7 sec) [ -5983.8061] [ 1036] [depth= 1] . ( 7 sec) [ -5982.7423] [ 1036] [depth= 1] . ( 8 sec) [ -5816.2620] [Branch lengths ] . ( 8 sec) [ -5815.2911] [GTR parameters ] . ( 8 sec) [ -5794.5011] [Alpha ][ 0.903083] . ( 9 sec) [ -5767.3652] [ 1039] [depth= 1] . ( 9 sec) [ -5736.9608] [ 1015] [depth= 3] . ( 9 sec) [ -5719.2978] [ 998] [depth= 4] . ( 9 sec) [ -5713.1049] [ 997] [depth= 1] . ( 9 sec) [ -5704.2238] [ 994] [depth= 1] . ( 9 sec) [ -5696.3489] [ 992] [depth= 2] . ( 9 sec) [ -5693.9637] [ 990] [depth= 1] . ( 10 sec) [ -5675.0563] [ 982] [depth= 4] . ( 10 sec) [ -5673.6023] [ 981] [depth= 1] . ( 10 sec) [ -5673.5211] [ 981] [depth= 2] . ( 10 sec) [ -5673.3754] [ 982] [depth= 1] . ( 10 sec) [ -5672.7064] [ 982] [depth= 2] . ( 10 sec) [ -5671.6727] [ 981] [depth= 1] . ( 10 sec) [ -5671.4930] [ 981] [depth= 1] . ( 14 sec) [ -5665.7079] [Branch lengths ] . ( 15 sec) [ -5665.4580] [GTR parameters ] . ( 15 sec) [ -5664.9227] [Alpha ][ 1.003673] . ( 16 sec) [ -5664.7874] [ 980] [depth= 2] . ( 16 sec) [ -5664.4467] [ 980] [depth= 1] . ( 17 sec) [ -5662.6473] [ 983] [depth= 1] . ( 18 sec) [ -5662.1167] [ 980] [depth= 1] . ( 21 sec) [ -5659.9206] [Branch lengths ] . ( 21 sec) [ -5659.9153] [GTR parameters ] . ( 21 sec) [ -5659.9153] [Alpha ][ 1.003673] . ( 26 sec) [ -5652.6317] [Branch lengths ] . ( 53 sec) [ -5650.5535] [Branch lengths ] . ( 53 sec) [ -5650.5535] [Topology ] . ( 55 sec) [ -5650.5405] [Topology ] . ( 56 sec) [ -5650.5385] [Topology ] . ( 57 sec) [ -5650.5381] [Topology ] . ( 57 sec) [ -5650.5218] [GTR parameters ] . ( 57 sec) [ -5650.5164] [Alpha ][ 1.014837] . ( 57 sec) [ -5650.5164] [Topology ] . ( 58 sec) [ -5650.5162] [Topology ] . ( 58 sec) [ -5650.5162] [GTR parameters ] . ( 59 sec) [ -5650.5162] [Alpha ][ 1.014837] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5650.516211. . [Random start 5/ 5] . Computing pairwise distances... . Building BioNJ tree... . Randomising the tree... . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16485.7418] [GTR parameters ] . ( 2 sec) [ -16179.8034] [Alpha ][ 0.500960] . ( 2 sec) [ -15984.5077] [ 2671] [depth= 6] . ( 2 sec) [ -15776.4277] [ 2622] [depth= 11] . ( 2 sec) [ -15471.0858] [ 2589] [depth= 5] . ( 2 sec) [ -15397.1371] [ 2585] [depth= 4] . ( 2 sec) [ -15149.6324] [ 2541] [depth= 7] . ( 2 sec) [ -15091.1448] [ 2536] [depth= 1] . ( 2 sec) [ -14759.9602] [ 2518] [depth= 6] . ( 2 sec) [ -14602.6319] [ 2519] [depth= 1] . ( 2 sec) [ -14255.2507] [ 2448] [depth= 2] . ( 2 sec) [ -14011.0056] [ 2364] [depth= 18] . ( 2 sec) [ -13602.5752] [ 2270] [depth= 6] . ( 2 sec) [ -13439.7049] [ 2239] [depth= 6] . ( 2 sec) [ -12993.3228] [ 2164] [depth= 13] . ( 2 sec) [ -12944.4611] [ 2163] [depth= 1] . ( 2 sec) [ -12833.3914] [ 2158] [depth= 15] . ( 2 sec) [ -12576.5658] [ 2088] [depth= 3] . ( 2 sec) [ -12415.4068] [ 2069] [depth= 8] . ( 2 sec) [ -12346.5056] [ 2065] [depth= 11] . ( 2 sec) [ -12337.8004] [ 2064] [depth= 1] . ( 2 sec) [ -10187.4408] [ 2060] [depth= 1] . ( 3 sec) [ -10079.8430] [ 2050] [depth= 12] . ( 3 sec) [ -9874.2126] [ 1959] [depth= 3] . ( 3 sec) [ -9831.3946] [ 1965] [depth= 9] . ( 3 sec) [ -9594.2551] [ 1948] [depth= 1] . ( 3 sec) [ -9586.6472] [ 1947] [depth= 1] . ( 3 sec) [ -9530.6486] [ 1950] [depth= 9] . ( 3 sec) [ -9290.5131] [ 1933] [depth= 10] . ( 3 sec) [ -9287.8599] [ 1939] [depth= 1] . ( 3 sec) [ -9078.6240] [ 1873] [depth= 6] . ( 3 sec) [ -9011.6864] [ 1816] [depth= 4] . ( 3 sec) [ -8905.1765] [ 1807] [depth= 6] . ( 3 sec) [ -8804.3228] [ 1728] [depth= 7] . ( 3 sec) [ -8790.4283] [ 1730] [depth= 1] . ( 3 sec) [ -8757.0667] [ 1698] [depth= 5] . ( 3 sec) [ -8602.2012] [ 1697] [depth= 9] . ( 3 sec) [ -8598.6519] [ 1697] [depth= 1] . ( 3 sec) [ -8490.9758] [ 1677] [depth= 12] . ( 3 sec) [ -8396.3250] [ 1677] [depth= 1] . ( 3 sec) [ -8330.1465] [ 1666] [depth= 9] . ( 3 sec) [ -8318.5607] [ 1655] [depth= 1] . ( 3 sec) [ -8300.0536] [ 1655] [depth= 9] . ( 3 sec) [ -8254.5944] [ 1654] [depth= 2] . ( 3 sec) [ -8182.2685] [ 1661] [depth= 1] . ( 3 sec) [ -8152.4748] [ 1654] [depth= 1] . ( 3 sec) [ -7958.6579] [ 1584] [depth= 6] . ( 4 sec) [ -7952.1836] [ 1579] [depth= 1] . ( 4 sec) [ -7782.0707] [ 1543] [depth= 7] . ( 4 sec) [ -7714.0595] [ 1546] [depth= 1] . ( 4 sec) [ -7549.3033] [ 1507] [depth= 1] . ( 4 sec) [ -7536.4237] [ 1507] [depth= 1] . ( 4 sec) [ -7529.0412] [ 1501] [depth= 1] . ( 4 sec) [ -7512.2302] [ 1500] [depth= 1] . ( 4 sec) [ -7477.8766] [ 1470] [depth= 4] . ( 4 sec) [ -7330.2010] [ 1426] [depth= 4] . ( 4 sec) [ -7178.1301] [ 1415] [depth= 3] . ( 4 sec) [ -7163.7261] [ 1408] [depth= 1] . ( 4 sec) [ -6817.5381] [ 1280] [depth= 8] . ( 4 sec) [ -6681.1638] [ 1274] [depth= 6] . ( 4 sec) [ -6562.9494] [ 1204] [depth= 1] . ( 4 sec) [ -6443.8443] [ 1193] [depth= 4] . ( 5 sec) [ -6423.0884] [ 1186] [depth= 1] . ( 5 sec) [ -6343.2203] [ 1167] [depth= 2] . ( 5 sec) [ -6335.9282] [ 1156] [depth= 4] . ( 5 sec) [ -6335.5654] [ 1157] [depth= 2] . ( 5 sec) [ -6317.8723] [ 1164] [depth= 1] . ( 5 sec) [ -6309.8156] [ 1168] [depth= 1] . ( 5 sec) [ -6266.3463] [ 1165] [depth= 1] . ( 5 sec) [ -6221.0392] [ 1153] [depth= 4] . ( 5 sec) [ -6155.8300] [ 1131] [depth= 1] . ( 5 sec) [ -6155.7359] [ 1130] [depth= 2] . ( 5 sec) [ -6145.9451] [ 1128] [depth= 1] . ( 5 sec) [ -6094.1085] [ 1124] [depth= 2] . ( 5 sec) [ -6083.0761] [ 1121] [depth= 1] . ( 5 sec) [ -6076.3032] [ 1121] [depth= 1] . ( 6 sec) [ -6059.1135] [ 1109] [depth= 3] . ( 6 sec) [ -5968.1546] [ 1094] [depth= 6] . ( 6 sec) [ -5955.3744] [ 1094] [depth= 2] . ( 6 sec) [ -5937.7057] [ 1084] [depth= 2] . ( 6 sec) [ -5917.6766] [ 1076] [depth= 1] . ( 6 sec) [ -5916.9427] [ 1077] [depth= 1] . ( 6 sec) [ -5907.8957] [ 1072] [depth= 1] . ( 6 sec) [ -5893.2193] [ 1064] [depth= 2] . ( 6 sec) [ -5887.9626] [ 1067] [depth= 2] . ( 7 sec) [ -5830.8557] [Branch lengths ] . ( 7 sec) [ -5829.5432] [GTR parameters ] . ( 7 sec) [ -5810.1101] [Alpha ][ 0.880129] . ( 8 sec) [ -5809.7690] [ 1065] [depth= 1] . ( 8 sec) [ -5793.5809] [ 1059] [depth= 1] . ( 9 sec) [ -5793.5279] [ 1063] [depth= 3] . ( 9 sec) [ -5793.4728] [ 1062] [depth= 2] . ( 9 sec) [ -5791.9527] [ 1062] [depth= 3] . ( 9 sec) [ -5791.5987] [ 1064] [depth= 1] . ( 9 sec) [ -5789.9479] [ 1062] [depth= 1] . ( 10 sec) [ -5786.4486] [ 1061] [depth= 1] . ( 10 sec) [ -5705.7072] [ 1005] [depth= 3] . ( 10 sec) [ -5705.6044] [ 1006] [depth= 1] . ( 10 sec) [ -5703.8035] [ 1006] [depth= 2] . ( 10 sec) [ -5701.6981] [ 1005] [depth= 2] . ( 10 sec) [ -5680.8250] [ 996] [depth= 1] . ( 11 sec) [ -5680.6280] [ 998] [depth= 1] . ( 11 sec) [ -5660.9561] [ 984] [depth= 1] . ( 11 sec) [ -5660.5875] [ 984] [depth= 1] . ( 11 sec) [ -5659.6739] [ 981] [depth= 1] . ( 12 sec) [ -5656.6417] [Branch lengths ] . ( 13 sec) [ -5656.2995] [GTR parameters ] . ( 13 sec) [ -5655.2939] [Alpha ][ 1.017997] . ( 13 sec) [ -5651.4341] [ 981] [depth= 2] . ( 14 sec) [ -5650.8640] [ 980] [depth= 1] . ( 17 sec) [ -5650.5299] [Branch lengths ] . ( 18 sec) [ -5650.5245] [GTR parameters ] . ( 18 sec) [ -5650.5240] [Alpha ][ 1.014306] . ( 23 sec) [ -5650.5163] [Branch lengths ] . ( 48 sec) [ -5650.5163] [Branch lengths ] . ( 48 sec) [ -5650.5163] [Topology ] . ( 49 sec) [ -5650.5163] [Topology ] . ( 49 sec) [ -5650.5163] [GTR parameters ] . ( 50 sec) [ -5650.5163] [Alpha ][ 1.014306] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5650.516252. . Computing pairwise distances... . Building BioNJ tree... . Maximizing likelihood (using NNI moves)... . Before opt ts/t=1.000000 LK=-5675.382185 . ( 0 sec) [ -5674.1403] [GTR parameters ] . ( 0 sec) [ -5674.1388] [Alpha ][ 0.993583] . ( 0 sec) [ -5674.1388] [Topology ] . ( 1 sec) [ -5656.4636] [Topology ] . ( 2 sec) [ -5651.5572] [Topology ] . ( 2 sec) [ -5650.8384] [Topology ] . ( 3 sec) [ -5650.6391] [Topology ] . ( 4 sec) [ -5650.5758] [Topology ] . ( 5 sec) [ -5650.5540] [Topology ] . ( 5 sec) [ -5650.5459] [Topology ] . ( 6 sec) [ -5650.5429] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-5650.542869 . ( 11 sec) [ -5650.5381] [GTR parameters ] . ( 11 sec) [ -5650.5195] [Alpha ][ 1.013446] . ( 11 sec) [ -5650.5195] [Topology ] . ( 12 sec) [ -5650.5175] [Topology ] . ( 12 sec) [ -5650.5167] [Topology ] . Checking for NNIs, optimizing five branches... . Before opt ts/t=1.000000 LK=-5650.516672 . ( 18 sec) [ -5650.5167] [GTR parameters ] . ( 18 sec) [ -5650.5166] [Alpha ][ 1.014460] . ( 18 sec) [ -5650.5166] [Topology ] . ( 18 sec) [ -5650.5163] [Topology ] . Checking for NNIs, optimizing five branches... . Checking for NNIs, optimizing five branches... . Maximizing likelihood (using SPR moves)... . ( 32 sec) [ -5674.1403] [GTR parameters ] . ( 32 sec) [ -5674.1388] [Alpha ][ 0.993583] . ( 32 sec) [ -5673.2321] [ 982] [depth= 1] . ( 32 sec) [ -5672.5291] [ 981] [depth= 1] . ( 32 sec) [ -5669.7361] [ 984] [depth= 1] . ( 32 sec) [ -5669.3985] [ 986] [depth= 1] . ( 32 sec) [ -5668.6233] [ 984] [depth= 1] . ( 35 sec) [ -5663.7516] [ 980] [depth= 3] . ( 36 sec) [ -5662.7453] [ 981] [depth= 1] . ( 37 sec) [ -5662.1190] [ 981] [depth= 1] . ( 37 sec) [ -5661.3337] [ 980] [depth= 1] . ( 38 sec) [ -5650.7574] [Branch lengths ] . ( 38 sec) [ -5650.7525] [GTR parameters ] . ( 38 sec) [ -5650.7367] [Alpha ][ 1.011886] . ( 43 sec) [ -5650.5716] [Branch lengths ] . ( 70 sec) [ -5650.5643] [Branch lengths ] . ( 70 sec) [ -5650.5643] [Topology ] . ( 71 sec) [ -5650.5638] [Topology ] . ( 71 sec) [ -5650.5637] [GTR parameters ] . ( 71 sec) [ -5650.5632] [Alpha ][ 1.015386] . ( 71 sec) [ -5650.5632] [Topology ] . ( 72 sec) [ -5650.5630] [Topology ] . ( 72 sec) [ -5650.5630] [GTR parameters ] . ( 72 sec) [ -5650.5630] [Alpha ][ 1.015386] . Checking for NNIs, optimizing five branches... . ( 79 sec) [ -5650.5263] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood obtained after NNI moves : -5650.516313 . Log likelihood obtained after SPR moves : -5650.526261 . Log likelihood of the current tree: -5650.516313. . Printing the most likely tree in file 'data72.phy_phyml_tree.txt'... . Best log likelihood : -5650.516211 . Time used 0h1m25s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo