IMPORTANT WARNING: Sequences Tax38 and Tax39 are exactly identical

IMPORTANT WARNING
Found 1 sequence that is exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/simu_raxml/data20.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 419 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.000000

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.184750 pi(C): 0.224950 pi(G): 0.334300 pi(T): 0.256000



0.574062 -9766.762767
1.243636 -9766.762767
2.943993 -9754.078011
5.666339 -9749.227302
9.361258 -9748.200738
13.475602 -9747.413115
16.749043 -9747.316825
18.743913 -9747.230619
18.774202 -9747.230619
20.810290 -9746.481447


Overall Time for 1 Inference 20.825415
Likelihood   : -9746.481447


Parsimony starting tree written to:    /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data20.phy_RAXML
Final tree written to:                 /auto/dufayard/res/simu_raxml/./RAxML_result.data20.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/simu_raxml/./RAxML_log.data20.phy_RAXML
Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data20.phy_RAXML