You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 348 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.172100 pi(C): 0.243050 pi(G): 0.346850 pi(T): 0.238000 0.581896 -5585.415770 1.364014 -5580.150959 2.835781 -5572.499803 4.539554 -5569.892012 7.349897 -5569.080409 10.116866 -5568.822172 12.678279 -5568.705333 14.259662 -5568.611041 14.282777 -5568.611041 15.596017 -5567.699970 Overall Time for 1 Inference 15.610808 Likelihood : -5567.699970 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data41.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data41.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data41.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data41.phy_RAXML