You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 353 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.186850 pi(C): 0.231000 pi(G): 0.328200 pi(T): 0.253950 0.324192 -5970.584306 1.131547 -5970.584306 3.144769 -5961.361334 5.462655 -5952.484723 8.303964 -5951.284442 11.130572 -5950.920611 13.400820 -5950.819903 14.941912 -5950.727469 14.964871 -5950.727469 16.512594 -5949.236460 Overall Time for 1 Inference 16.527044 Likelihood : -5949.236460 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data48.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data48.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data48.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data48.phy_RAXML