IMPORTANT WARNING: Sequences Tax38 and Tax39 are exactly identical


IMPORTANT WARNING: Sequences Tax36 and Tax37 are exactly identical

IMPORTANT WARNING
Found 2 sequences that are exactly identical to other sequences in the alignment.
Normally they should be excluded from the analysis.

Just in case you might need it, an alignment file with 
sequence duplicates removed is printed to file /auto/dufayard/res/simu_raxml/data54.phy.reduced


You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008

Alignment has 272 distinct alignment patterns

Proportion of gaps and completely undetermined characters in this alignment: 0.000000

RAxML rapid hill-climbing mode

Executing 1 inference on the original alignment using a distinct randomized MP tree

All free model parameters will be estimated by RAxML
GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter
GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units

Partition: 0
Name: No Name Provided
DataType: DNA
Substitution Matrix: GTR
Empirical Base Frequencies:
pi(A): 0.182050 pi(C): 0.249900 pi(G): 0.327100 pi(T): 0.240950



0.238838 -4435.307831
0.739708 -4434.761797
1.829759 -4427.956078
3.077921 -4426.253095
5.136800 -4425.729506
7.009079 -4425.503614
8.024947 -4425.414362
8.043653 -4425.414362
9.065349 -4424.857310


Overall Time for 1 Inference 9.080165
Likelihood   : -4424.857310


Parsimony starting tree written to:    /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data54.phy_RAXML
Final tree written to:                 /auto/dufayard/res/simu_raxml/./RAxML_result.data54.phy_RAXML
Execution Log File written to:         /auto/dufayard/res/simu_raxml/./RAxML_log.data54.phy_RAXML
Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data54.phy_RAXML