You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 368 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.195950 pi(C): 0.234000 pi(G): 0.346350 pi(T): 0.223700 0.385432 -6383.937673 0.868345 -6383.937673 2.084448 -6375.922700 3.905790 -6373.714240 6.521080 -6372.830868 9.129679 -6372.535504 11.814297 -6372.437057 14.073664 -6372.349758 16.029015 -6372.272143 16.278465 -6372.272143 17.707897 -6371.621142 Overall Time for 1 Inference 17.910720 Likelihood : -6371.621142 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data55.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data55.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data55.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data55.phy_RAXML