You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 403 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.177850 pi(C): 0.243650 pi(G): 0.306650 pi(T): 0.271850 0.445071 -8243.357628 1.070299 -8243.357628 2.656269 -8234.965312 4.918468 -8232.168224 8.243552 -8231.293961 11.692672 -8231.042581 15.184245 -8230.944546 18.307796 -8230.861115 20.410541 -8230.790106 20.436546 -8230.790106 22.073571 -8230.495554 Overall Time for 1 Inference 22.089137 Likelihood : -8230.495554 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data56.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data56.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data56.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data56.phy_RAXML