You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 322 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.181450 pi(C): 0.242200 pi(G): 0.315150 pi(T): 0.261200 0.293566 -5111.827843 0.752929 -5111.827843 1.912245 -5104.247809 3.496425 -5100.100961 5.893227 -5099.180010 8.544944 -5098.830021 10.546948 -5098.733992 11.989628 -5098.646169 12.177754 -5098.646169 13.566014 -5097.358251 Overall Time for 1 Inference 13.581141 Likelihood : -5097.358251 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data81.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data81.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data81.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data81.phy_RAXML