You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 399 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.181750 pi(C): 0.227550 pi(G): 0.316900 pi(T): 0.273800 0.623298 -7762.897525 1.431871 -7760.405302 3.108914 -7749.683411 5.471284 -7744.386663 8.493571 -7743.427625 11.621663 -7743.000093 14.794121 -7742.902634 17.995361 -7742.817134 20.835475 -7742.741948 22.731522 -7742.675715 22.757172 -7742.675715 24.541294 -7742.184017 Overall Time for 1 Inference 24.555704 Likelihood : -7742.184017 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data90.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data90.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data90.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data90.phy_RAXML