You are using RAxML version 7.0.4 released by Alexandros Stamatakis in April 2008 Alignment has 402 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.000000 RAxML rapid hill-climbing mode Executing 1 inference on the original alignment using a distinct randomized MP tree All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Name: No Name Provided DataType: DNA Substitution Matrix: GTR Empirical Base Frequencies: pi(A): 0.162400 pi(C): 0.259400 pi(G): 0.316200 pi(T): 0.262000 0.474372 -8435.508043 1.148608 -8430.233746 2.872020 -8422.335266 5.220975 -8420.322332 8.799964 -8419.629857 11.914367 -8419.409601 13.821126 -8419.269741 13.846779 -8419.269741 15.453977 -8418.524157 Overall Time for 1 Inference 15.469224 Likelihood : -8418.524157 Parsimony starting tree written to: /auto/dufayard/res/simu_raxml/./RAxML_parsimonyTree.data93.phy_RAXML Final tree written to: /auto/dufayard/res/simu_raxml/./RAxML_result.data93.phy_RAXML Execution Log File written to: /auto/dufayard/res/simu_raxml/./RAxML_log.data93.phy_RAXML Execution information file written to: /auto/dufayard/res/simu_raxml/./RAxML_info.data93.phy_RAXML