.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2707_115x1677_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 759 patterns found. (out of a total of 1677 sites) . 924 sites without polymorphism (55.10%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 46Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -11652.5156] [GTR parameters ] . ( 5 sec) [ -11452.6188] [Alpha ][ 0.500960] . ( 7 sec) [ -11452.0929] [ 1804] [depth= 1] . ( 7 sec) [ -11450.2527] [ 1804] [depth= 1] . ( 7 sec) [ -11449.6563] [ 1804] [depth= 1] . ( 7 sec) [ -11449.6408] [ 1804] [depth= 1] . ( 8 sec) [ -11449.1939] [ 1804] [depth= 2] . ( 10 sec) [ -11448.9557] [ 1804] [depth= 2] . ( 10 sec) [ -11444.7108] [ 1803] [depth= 2] . ( 11 sec) [ -11443.9941] [ 1803] [depth= 1] . ( 11 sec) [ -11443.6221] [ 1803] [depth= 1] . ( 11 sec) [ -11442.0931] [ 1803] [depth= 3] . ( 15 sec) [ -11439.9495] [ 1818] [depth= 1] . ( 16 sec) [ -11431.1045] [ 1815] [depth= 1] . ( 20 sec) [ -11430.6152] [ 1815] [depth= 1] . ( 20 sec) [ -11430.4390] [ 1815] [depth= 1] . ( 21 sec) [ -11430.2673] [ 1815] [depth= 1] . ( 22 sec) [ -11428.8043] [ 1818] [depth= 1] . ( 23 sec) [ -11425.3632] [ 1815] [depth= 1] . ( 23 sec) [ -11405.3575] [ 1814] [depth= 3] . ( 24 sec) [ -11379.2932] [ 1815] [depth= 1] . ( 24 sec) [ -11376.8116] [ 1814] [depth= 1] . ( 24 sec) [ -11260.5507] [ 1815] [depth= 1] . ( 25 sec) [ -11211.7209] [ 1818] [depth= 5] . ( 25 sec) [ -10932.8505] [ 1816] [depth= 5] . ( 25 sec) [ -10928.3357] [ 1818] [depth= 1] . ( 26 sec) [ -10928.0609] [ 1817] [depth= 1] . ( 27 sec) [ -10862.3752] [ 1822] [depth= 1] . ( 27 sec) [ -10682.0570] [ 1817] [depth= 1] . ( 27 sec) [ -10506.1219] [ 1822] [depth= 1] . ( 28 sec) [ -10506.0163] [ 1824] [depth= 1] . ( 28 sec) [ -10486.0299] [ 1811] [depth= 16] . ( 28 sec) [ -10485.6073] [ 1811] [depth= 1] . ( 28 sec) [ -10481.9317] [ 1811] [depth= 2] . ( 29 sec) [ -10480.5685] [ 1811] [depth= 2] . ( 29 sec) [ -10480.5001] [ 1811] [depth= 2] . ( 29 sec) [ -10479.9902] [ 1811] [depth= 2] . ( 29 sec) [ -10478.6706] [ 1812] [depth= 5] . ( 31 sec) [ -10345.4997] [ 1812] [depth= 1] . ( 31 sec) [ -10344.8115] [ 1812] [depth= 1] . ( 32 sec) [ -10343.9147] [ 1812] [depth= 1] . ( 32 sec) [ -10343.6896] [ 1812] [depth= 1] . ( 33 sec) [ -10342.7771] [ 1812] [depth= 1] . ( 33 sec) [ -10342.7585] [ 1812] [depth= 3] . ( 33 sec) [ -10342.6410] [ 1812] [depth= 1] . ( 34 sec) [ -10341.2968] [ 1812] [depth= 2] . ( 34 sec) [ -10341.2713] [ 1812] [depth= 1] . ( 34 sec) [ -10341.2601] [ 1812] [depth= 3] . ( 35 sec) [ -10341.0839] [ 1812] [depth= 1] . ( 36 sec) [ -10339.4682] [ 1812] [depth= 1] . ( 36 sec) [ -10339.2280] [ 1812] [depth= 1] . ( 37 sec) [ -10330.8042] [ 1813] [depth= 1] . ( 37 sec) [ -10330.4004] [ 1813] [depth= 2] . ( 37 sec) [ -10306.4524] [ 1813] [depth= 8] . ( 38 sec) [ -10305.0688] [ 1813] [depth= 3] . ( 38 sec) [ -10305.0362] [ 1813] [depth= 2] . ( 39 sec) [ -10290.7678] [ 1818] [depth= 4] . ( 40 sec) [ -10275.7196] [ 1815] [depth= 4] . ( 40 sec) [ -10275.6396] [ 1815] [depth= 1] . ( 40 sec) [ -10275.6051] [ 1815] [depth= 1] . ( 41 sec) [ -10275.5351] [ 1815] [depth= 2] . ( 41 sec) [ -10274.7962] [ 1815] [depth= 3] . ( 42 sec) [ -10274.7424] [ 1815] [depth= 1] . ( 42 sec) [ -10274.7241] [ 1815] [depth= 1] . ( 42 sec) [ -10269.5965] [ 1814] [depth= 1] . ( 43 sec) [ -10269.5806] [ 1814] [depth= 2] . ( 44 sec) [ -10269.5653] [ 1814] [depth= 1] . ( 44 sec) [ -10269.5203] [ 1814] [depth= 2] . ( 46 sec) [ -10267.5626] [ 1814] [depth= 1] . ( 47 sec) [ -10267.3426] [ 1814] [depth= 3] . ( 47 sec) [ -10260.5144] [ 1814] [depth= 1] . ( 49 sec) [ -10259.3318] [ 1814] [depth= 7] . ( 49 sec) [ -10259.3152] [ 1814] [depth= 1] . ( 50 sec) [ -10258.6743] [ 1814] [depth= 1] . ( 51 sec) [ -10258.5015] [ 1814] [depth= 2] . ( 52 sec) [ -10258.4641] [ 1814] [depth= 2] . ( 52 sec) [ -10257.5676] [ 1814] [depth= 2] . ( 52 sec) [ -10257.4190] [ 1814] [depth= 3] . ( 54 sec) [ -10232.7877] [ 1819] [depth= 5] . ( 55 sec) [ -10228.8684] [ 1819] [depth= 2] . ( 55 sec) [ -10228.2124] [ 1819] [depth= 1] . ( 56 sec) [ -10227.3146] [ 1819] [depth= 3] . ( 57 sec) [ -10226.9743] [ 1819] [depth= 3] . ( 57 sec) [ -10226.4122] [ 1819] [depth= 3] . ( 57 sec) [ -10226.3557] [ 1819] [depth= 1] . ( 58 sec) [ -10226.3196] [ 1819] [depth= 2] . ( 59 sec) [ -10222.9446] [ 1821] [depth= 1] . ( 61 sec) [ -10221.1931] [ 1817] [depth= 2] . ( 63 sec) [ -10220.1763] [ 1817] [depth= 2] . ( 64 sec) [ -10218.8665] [ 1812] [depth= 1] . ( 65 sec) [ -10218.5340] [ 1812] [depth= 1] . ( 68 sec) [ -10218.1278] [ 1812] [depth= 1] . ( 68 sec) [ -10217.9908] [ 1812] [depth= 1] . ( 69 sec) [ -10217.9197] [ 1812] [depth= 1] . ( 69 sec) [ -10217.8218] [ 1812] [depth= 2] . ( 73 sec) [ -10216.2169] [ 1812] [depth= 4] . ( 73 sec) [ -10215.6185] [ 1812] [depth= 4] . ( 74 sec) [ -10215.0826] [ 1812] [depth= 1] . ( 74 sec) [ -10213.9255] [ 1812] [depth= 3] . ( 78 sec) [ -10210.9828] [ 1812] [depth= 4] . ( 79 sec) [ -10209.1256] [ 1811] [depth= 2] . ( 79 sec) [ -10209.0368] [ 1813] [depth= 1] . ( 80 sec) [ -10203.1643] [ 1812] [depth= 3] . ( 80 sec) [ -10202.7814] [ 1811] [depth= 2] . ( 81 sec) [ -10202.3141] [ 1809] [depth= 1] . ( 81 sec) [ -10201.0728] [ 1809] [depth= 1] . ( 81 sec) [ -10196.3600] [ 1811] [depth= 1] . ( 81 sec) [ -10193.7246] [ 1809] [depth= 1] . ( 81 sec) [ -10180.4249] [ 1809] [depth= 2] . ( 82 sec) [ -10178.5417] [ 1804] [depth= 2] . ( 82 sec) [ -10175.1988] [ 1804] [depth= 1] . ( 82 sec) [ -10161.7998] [ 1803] [depth= 2] . ( 82 sec) [ -10155.9310] [ 1802] [depth= 2] . ( 83 sec) [ -10155.8624] [ 1802] [depth= 1] . ( 84 sec) [ -10148.1001] [ 1806] [depth= 6] . ( 84 sec) [ -10147.9870] [ 1806] [depth= 1] . ( 85 sec) [ -10147.4608] [ 1806] [depth= 3] . ( 85 sec) [ -10127.8867] [ 1807] [depth= 2] . ( 85 sec) [ -10126.4583] [ 1807] [depth= 2] . ( 85 sec) [ -10120.9671] [ 1804] [depth= 3] . ( 86 sec) [ -10116.5433] [ 1803] [depth= 8] . ( 86 sec) [ -10113.3981] [ 1803] [depth= 2] . ( 86 sec) [ -10109.3047] [ 1802] [depth= 3] . ( 87 sec) [ -10108.0795] [ 1802] [depth= 1] . ( 89 sec) [ -10107.9814] [ 1802] [depth= 1] . ( 89 sec) [ -10107.5590] [ 1802] [depth= 1] . ( 89 sec) [ -10106.8627] [ 1802] [depth= 1] . ( 90 sec) [ -10106.7735] [ 1802] [depth= 1] . ( 90 sec) [ -10105.8981] [ 1801] [depth= 6] . ( 99 sec) [ -10105.7823] [ 1801] [depth= 2] . ( 101 sec) [ -10105.0299] [ 1801] [depth= 1] . ( 101 sec) [ -10104.8888] [ 1801] [depth= 1] . ( 104 sec) [ -10104.0647] [ 1801] [depth= 1] . ( 104 sec) [ -10104.0379] [ 1801] [depth= 2] . ( 104 sec) [ -10103.8436] [ 1801] [depth= 4] . ( 104 sec) [ -10103.8001] [ 1801] [depth= 2] . ( 105 sec) [ -10103.4647] [ 1801] [depth= 3] . ( 106 sec) [ -10103.3643] [ 1801] [depth= 2] . ( 107 sec) [ -10103.2997] [ 1801] [depth= 2] . ( 108 sec) [ -10102.5848] [ 1801] [depth= 3] . ( 109 sec) [ -10101.9438] [ 1801] [depth= 1] . ( 110 sec) [ -10101.8763] [ 1801] [depth= 4] . ( 110 sec) [ -10101.8585] [ 1801] [depth= 1] . ( 110 sec) [ -10101.8157] [ 1801] [depth= 1] . ( 111 sec) [ -10101.7736] [ 1801] [depth= 1] . ( 111 sec) [ -10101.7615] [ 1801] [depth= 3] . ( 125 sec) [ -9953.1794] [Branch lengths ] . ( 129 sec) [ -9941.6140] [GTR parameters ] . ( 130 sec) [ -9881.3484] [Alpha ][ 0.271001] . ( 131 sec) [ -9881.2692] [ 1801] [depth= 1] . ( 131 sec) [ -9881.1741] [ 1801] [depth= 1] . ( 132 sec) [ -9881.1510] [ 1801] [depth= 1] . ( 132 sec) [ -9881.0101] [ 1801] [depth= 3] . ( 133 sec) [ -9880.9907] [ 1801] [depth= 3] . ( 136 sec) [ -9880.9311] [ 1801] [depth= 1] . ( 137 sec) [ -9880.8473] [ 1801] [depth= 1] . ( 138 sec) [ -9878.1579] [ 1788] [depth= 1] . ( 139 sec) [ -9873.2427] [ 1801] [depth= 1] . ( 143 sec) [ -9872.8832] [ 1801] [depth= 1] . ( 143 sec) [ -9872.6139] [ 1801] [depth= 1] . ( 146 sec) [ -9872.4297] [ 1801] [depth= 1] . ( 148 sec) [ -9872.4004] [ 1802] [depth= 2] . ( 148 sec) [ -9862.4614] [ 1799] [depth= 5] . ( 149 sec) [ -9861.9306] [ 1797] [depth= 1] . ( 149 sec) [ -9861.8916] [ 1797] [depth= 1] . ( 149 sec) [ -9861.7102] [ 1797] [depth= 4] . ( 150 sec) [ -9861.6852] [ 1797] [depth= 1] . ( 150 sec) [ -9861.6545] [ 1797] [depth= 3] . ( 154 sec) [ -9860.3191] [ 1792] [depth= 2] . ( 154 sec) [ -9860.2976] [ 1792] [depth= 1] . ( 155 sec) [ -9860.1987] [ 1792] [depth= 2] . ( 158 sec) [ -9860.1795] [ 1792] [depth= 1] . ( 159 sec) [ -9860.1642] [ 1792] [depth= 2] . ( 160 sec) [ -9860.1193] [ 1792] [depth= 1] . ( 164 sec) [ -9859.9091] [ 1792] [depth= 1] . ( 168 sec) [ -9859.8069] [ 1792] [depth= 3] . ( 171 sec) [ -9859.2012] [ 1792] [depth= 1] . ( 174 sec) [ -9847.2649] [ 1790] [depth= 5] . ( 175 sec) [ -9846.9679] [ 1790] [depth= 1] . ( 175 sec) [ -9844.7968] [ 1790] [depth= 3] . ( 176 sec) [ -9844.5218] [ 1790] [depth= 3] . ( 177 sec) [ -9844.4750] [ 1790] [depth= 3] . ( 178 sec) [ -9844.2455] [ 1790] [depth= 3] . ( 178 sec) [ -9844.2291] [ 1790] [depth= 1] . ( 180 sec) [ -9843.6004] [ 1791] [depth= 2] . ( 182 sec) [ -9842.2061] [ 1795] [depth= 1] . ( 182 sec) [ -9841.3029] [ 1794] [depth= 1] . ( 183 sec) [ -9836.1393] [ 1792] [depth= 1] . ( 187 sec) [ -9836.0983] [ 1792] [depth= 2] . ( 187 sec) [ -9835.7542] [ 1792] [depth= 4] . ( 188 sec) [ -9835.6089] [ 1792] [depth= 1] . ( 191 sec) [ -9835.5737] [ 1792] [depth= 2] . ( 195 sec) [ -9835.5561] [ 1792] [depth= 3] . ( 205 sec) [ -9835.5391] [ 1792] [depth= 5] . ( 211 sec) [ -9834.6284] [ 1791] [depth= 7] . ( 213 sec) [ -9834.5055] [ 1791] [depth= 1] . ( 213 sec) [ -9834.4278] [ 1791] [depth= 1] . ( 213 sec) [ -9834.3327] [ 1791] [depth= 5] . ( 217 sec) [ -9834.2188] [ 1791] [depth= 2] . ( 222 sec) [ -9834.2047] [ 1791] [depth= 4] . ( 222 sec) [ -9834.1833] [ 1791] [depth= 1] . ( 230 sec) [ -9834.1377] [ 1791] [depth= 2] . ( 232 sec) [ -9834.1029] [ 1791] [depth= 1] . ( 232 sec) [ -9834.0909] [ 1791] [depth= 2] . ( 234 sec) [ -9834.0328] [ 1791] [depth= 1] . ( 234 sec) [ -9833.9698] [ 1791] [depth= 3] . ( 235 sec) [ -9833.6468] [ 1791] [depth= 2] . ( 235 sec) [ -9833.6321] [ 1791] [depth= 3] . ( 236 sec) [ -9833.5122] [ 1791] [depth= 2] . ( 236 sec) [ -9833.4785] [ 1791] [depth= 3] . ( 241 sec) [ -9833.4450] [ 1791] [depth= 5] . ( 244 sec) [ -9833.2978] [ 1791] [depth= 5] . ( 244 sec) [ -9833.2720] [ 1791] [depth= 2] . ( 260 sec) [ -9803.7671] [Branch lengths ] . ( 264 sec) [ -9800.3513] [GTR parameters ] . ( 265 sec) [ -9799.7017] [Alpha ][ 0.256544] . ( 266 sec) [ -9799.6585] [ 1791] [depth= 3] . ( 266 sec) [ -9799.6427] [ 1791] [depth= 1] . ( 268 sec) [ -9799.6110] [ 1791] [depth= 2] . ( 270 sec) [ -9799.5992] [ 1791] [depth= 2] . ( 274 sec) [ -9799.0196] [ 1775] [depth= 1] . ( 281 sec) [ -9798.7283] [ 1775] [depth= 2] . ( 282 sec) [ -9798.5514] [ 1774] [depth= 1] . ( 288 sec) [ -9798.0360] [ 1776] [depth= 1] . ( 294 sec) [ -9795.6130] [ 1781] [depth= 2] . ( 295 sec) [ -9795.5867] [ 1781] [depth= 3] . ( 295 sec) [ -9795.5644] [ 1781] [depth= 3] . ( 295 sec) [ -9795.4940] [ 1781] [depth= 1] . ( 296 sec) [ -9795.4829] [ 1781] [depth= 1] . ( 297 sec) [ -9795.1437] [ 1781] [depth= 1] . ( 298 sec) [ -9794.6439] [ 1781] [depth= 2] . ( 316 sec) [ -9794.6310] [ 1781] [depth= 3] . ( 317 sec) [ -9794.6001] [ 1776] [depth= 1] . ( 319 sec) [ -9794.5703] [ 1776] [depth= 3] . ( 339 sec) [ -9794.5218] [ 1776] [depth= 1] . ( 363 sec) [ -9793.3703] [ 1776] [depth= 1] . ( 377 sec) [ -9793.3389] [ 1776] [depth= 1] . ( 382 sec) [ -9793.3157] [ 1776] [depth= 2] . ( 395 sec) [ -9793.2296] [ 1776] [depth= 4] . ( 427 sec) [ -9772.2670] [Branch lengths ] . ( 431 sec) [ -9771.3043] [GTR parameters ] . ( 431 sec) [ -9770.5418] [Alpha ][ 0.242539] . ( 432 sec) [ -9770.5201] [ 1776] [depth= 3] . ( 432 sec) [ -9770.4923] [ 1776] [depth= 1] . ( 433 sec) [ -9770.4729] [ 1776] [depth= 1] . ( 433 sec) [ -9770.4143] [ 1776] [depth= 1] . ( 449 sec) [ -9770.3980] [ 1776] [depth= 1] . ( 451 sec) [ -9770.0808] [ 1775] [depth= 1] . ( 452 sec) [ -9769.1841] [ 1772] [depth= 1] . ( 456 sec) [ -9769.1155] [ 1772] [depth= 2] . ( 463 sec) [ -9769.0782] [ 1772] [depth= 1] . ( 466 sec) [ -9768.8525] [ 1772] [depth= 4] . ( 474 sec) [ -9768.8053] [ 1772] [depth= 2] . ( 481 sec) [ -9768.6990] [ 1772] [depth= 1] . ( 487 sec) [ -9768.4987] [ 1772] [depth= 2] . ( 487 sec) [ -9768.4545] [ 1772] [depth= 2] . ( 503 sec) [ -9768.3774] [ 1772] [depth= 3] . ( 504 sec) [ -9768.3491] [ 1772] [depth= 2] . ( 509 sec) [ -9767.9802] [ 1772] [depth= 1] . ( 592 sec) [ -9755.7875] [Branch lengths ] . ( 595 sec) [ -9755.6310] [GTR parameters ] . ( 595 sec) [ -9755.1136] [Alpha ][ 0.232004] . ( 596 sec) [ -9755.0893] [ 1772] [depth= 2] . ( 598 sec) [ -9755.0692] [ 1772] [depth= 1] . ( 599 sec) [ -9755.0389] [ 1772] [depth= 2] . ( 600 sec) [ -9755.0012] [ 1772] [depth= 2] . ( 602 sec) [ -9754.9835] [ 1772] [depth= 1] . ( 617 sec) [ -9754.9662] [ 1772] [depth= 1] . ( 618 sec) [ -9754.6012] [ 1773] [depth= 1] . ( 630 sec) [ -9754.5902] [ 1773] [depth= 3] . ( 634 sec) [ -9754.5709] [ 1773] [depth= 1] . ( 765 sec) [ -9745.7989] [Branch lengths ] . ( 769 sec) [ -9745.6503] [GTR parameters ] . ( 769 sec) [ -9745.0591] [Alpha ][ 0.221561] . ( 772 sec) [ -9745.0394] [ 1773] [depth= 2] . ( 772 sec) [ -9744.9778] [ 1773] [depth= 3] . ( 776 sec) [ -9744.8273] [ 1773] [depth= 1] . ( 792 sec) [ -9744.7975] [ 1773] [depth= 1] . ( 793 sec) [ -9744.7786] [ 1772] [depth= 1] . ( 889 sec) [ -9744.7681] [ 1772] [depth= 2] . ( 939 sec) [ -9738.4495] [Branch lengths ] . ( 942 sec) [ -9738.3435] [GTR parameters ] . ( 942 sec) [ -9737.7858] [Alpha ][ 0.211998] . ( 945 sec) [ -9737.7480] [ 1772] [depth= 3] . ( 948 sec) [ -9737.7294] [ 1772] [depth= 2] . ( 961 sec) [ -9737.6210] [ 1773] [depth= 1] . ( 964 sec) [ -9737.5690] [ 1774] [depth= 1] . ( 979 sec) [ -9737.5563] [ 1775] [depth= 2] . ( 979 sec) [ -9737.5456] [ 1775] [depth= 1] . ( 1111 sec) [ -9730.2258] [Branch lengths ] . ( 1114 sec) [ -9730.0041] [GTR parameters ] . ( 1114 sec) [ -9729.4555] [Alpha ][ 0.203008] . ( 1116 sec) [ -9729.4367] [ 1775] [depth= 2] . ( 1287 sec) [ -9725.8229] [Branch lengths ] . ( 1290 sec) [ -9725.7603] [GTR parameters ] . ( 1291 sec) [ -9725.4276] [Alpha ][ 0.196247] . ( 1294 sec) [ -9725.4155] [ 1775] [depth= 2] . ( 1319 sec) [ -9725.3902] [ 1775] [depth= 3] . ( 1460 sec) [ -9722.1618] [Branch lengths ] . ( 1461 sec) [ -9722.1311] [GTR parameters ] . ( 1462 sec) [ -9721.9653] [Alpha ][ 0.191592] . ( 1622 sec) [ -9721.3562] [Branch lengths ] . ( 1671 sec) [ -9721.2129] [ 1773] [depth= 1] . ( 1685 sec) [ -9721.0153] [ 1772] [depth= 2] . ( 1786 sec) [ -9721.0000] [ 1772] [depth= 1] . ( 1797 sec) [ -9720.6734] [Branch lengths ] . ( 1800 sec) [ -9720.6482] [GTR parameters ] . ( 1801 sec) [ -9720.5001] [Alpha ][ 0.187220] . ( 1801 sec) [ -9720.5001] [Topology ] . ( 1804 sec) [ -9720.3292] [Topology ] . ( 1807 sec) [ -9720.2420] [Topology ] . ( 1811 sec) [ -9720.1868] [Topology ] . ( 1814 sec) [ -9720.1510] [Topology ] . ( 1817 sec) [ -9720.1275] [Topology ] . ( 1820 sec) [ -9720.1120] [Topology ] . ( 1822 sec) [ -9720.0959] [GTR parameters ] . ( 1822 sec) [ -9719.9999] [Alpha ][ 0.183753] . ( 1822 sec) [ -9719.9999] [Topology ] . ( 1825 sec) [ -9719.9431] [Topology ] . ( 1829 sec) [ -9719.9109] [Topology ] . ( 1832 sec) [ -9719.8905] [Topology ] . ( 1835 sec) [ -9719.8773] [Topology ] . ( 1838 sec) [ -9719.8685] [Topology ] . ( 1842 sec) [ -9719.8626] [Topology ] . ( 1843 sec) [ -9719.8556] [GTR parameters ] . ( 1843 sec) [ -9719.8198] [Alpha ][ 0.181671] . ( 1844 sec) [ -9719.8198] [Topology ] . ( 1847 sec) [ -9719.7981] [Topology ] . ( 1850 sec) [ -9719.7856] [Topology ] . ( 1853 sec) [ -9719.7775] [Topology ] . ( 1857 sec) [ -9719.7727] [Topology ] . ( 1860 sec) [ -9719.7699] [Topology ] . ( 1863 sec) [ -9719.7681] [Topology ] . ( 1865 sec) [ -9719.7655] [GTR parameters ] . ( 1865 sec) [ -9719.7521] [Alpha ][ 0.180440] . ( 1865 sec) [ -9719.7521] [Topology ] . ( 1869 sec) [ -9719.7447] [Topology ] . ( 1872 sec) [ -9719.7407] [Topology ] . ( 1875 sec) [ -9719.7382] [Topology ] . ( 1878 sec) [ -9719.7367] [Topology ] . ( 1882 sec) [ -9719.7358] [Topology ] . ( 1882 sec) [ -9719.7350] [GTR parameters ] . ( 1883 sec) [ -9719.7303] [Alpha ][ 0.179746] . ( 1883 sec) [ -9719.7303] [Topology ] . ( 1886 sec) [ -9719.7274] [Topology ] . ( 1889 sec) [ -9719.7258] [Topology ] . ( 1893 sec) [ -9719.7248] [Topology ] . ( 1894 sec) [ -9719.7246] [GTR parameters ] . ( 1894 sec) [ -9719.7233] [Alpha ][ 0.179429] . ( 1894 sec) [ -9719.7233] [Topology ] . ( 1897 sec) [ -9719.7219] [Topology ] . ( 1901 sec) [ -9719.7210] [Topology ] . ( 1901 sec) [ -9719.7209] [GTR parameters ] . ( 1902 sec) [ -9719.7205] [Alpha ][ 0.179077] . ( 1902 sec) [ -9719.7205] [Topology ] . ( 1905 sec) [ -9719.7191] [Topology ] . ( 1908 sec) [ -9719.7183] [Topology ] . ( 1909 sec) [ -9719.7182] [GTR parameters ] . ( 1910 sec) [ -9719.7182] [Alpha ][ 0.179077] . ( 1910 sec) [ -9719.7182] [Topology ] . ( 1913 sec) [ -9719.7177] [Topology ] . ( 1914 sec) [ -9719.7177] [GTR parameters ] . ( 1914 sec) [ -9719.7176] [Alpha ][ 0.178845] . Checking for NNIs, optimizing five branches... . ( 1939 sec) [ -9719.7166] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9719.716553. . Printing the most likely tree in file 'nucleic_M2707_115x1677_2006.phy_phyml_tree.txt'... . Time used 0h32m46s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1953.27user 0.00system 32:47.22elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps