.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : nucleic_M2623_139x1044_2006.phy . Data type : dna . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : GTR . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Nucleotide equilibrium frequencies : empirical . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 959 patterns found. (out of a total of 1044 sites) . 202 sites without polymorphism (19.35%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 71Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 18 sec) [ -48412.0933] [GTR parameters ] . ( 20 sec) [ -47896.6604] [Alpha ][ 0.500960] . ( 32 sec) [ -47896.0418] [11967] [depth= 1] . ( 32 sec) [ -47889.7491] [11967] [depth= 1] . ( 33 sec) [ -47889.7184] [11967] [depth= 1] . ( 77 sec) [ -47884.8015] [11974] [depth= 1] . ( 77 sec) [ -47884.1065] [11967] [depth= 1] . ( 77 sec) [ -47880.9605] [11971] [depth= 1] . ( 112 sec) [ -47880.5369] [11972] [depth= 1] . ( 160 sec) [ -47774.6680] [11977] [depth= 1] . ( 160 sec) [ -47746.4842] [11974] [depth= 1] . ( 201 sec) [ -47691.9593] [11965] [depth= 10] . ( 201 sec) [ -47678.9464] [11944] [depth= 7] . ( 216 sec) [ -47669.6854] [11942] [depth= 1] . ( 217 sec) [ -47652.6275] [11958] [depth= 2] . ( 217 sec) [ -47618.0284] [11995] [depth= 7] . ( 218 sec) [ -47605.0168] [12040] [depth= 1] . ( 219 sec) [ -47597.5452] [12038] [depth= 1] . ( 220 sec) [ -47597.0223] [12041] [depth= 2] . ( 269 sec) [ -47594.4169] [12032] [depth= 1] . ( 270 sec) [ -47545.8669] [12017] [depth= 8] . ( 270 sec) [ -47482.2905] [12015] [depth= 2] . ( 279 sec) [ -47478.4228] [12018] [depth= 2] . ( 292 sec) [ -47453.2300] [12079] [depth= 1] . ( 293 sec) [ -47427.3825] [12120] [depth= 3] . ( 294 sec) [ -47418.4231] [12132] [depth= 1] . ( 294 sec) [ -47417.9748] [12157] [depth= 1] . ( 323 sec) [ -47417.8582] [12155] [depth= 1] . ( 324 sec) [ -47412.7445] [12125] [depth= 3] . ( 331 sec) [ -47412.1618] [12123] [depth= 1] . ( 338 sec) [ -47411.5311] [12125] [depth= 1] . ( 386 sec) [ -47392.8315] [12130] [depth= 1] . ( 387 sec) [ -47391.8533] [12134] [depth= 1] . ( 402 sec) [ -47383.9333] [12132] [depth= 2] . ( 402 sec) [ -47379.0562] [12132] [depth= 1] . ( 431 sec) [ -47367.0272] [12132] [depth= 1] . ( 432 sec) [ -47360.9775] [12134] [depth= 2] . ( 473 sec) [ -47359.8978] [12134] [depth= 1] . ( 481 sec) [ -47359.8795] [12132] [depth= 1] . ( 482 sec) [ -47359.5267] [12134] [depth= 1] . ( 498 sec) [ -47349.6441] [12125] [depth= 1] . ( 498 sec) [ -47344.0383] [12134] [depth= 1] . ( 499 sec) [ -47341.5140] [12105] [depth= 3] . ( 500 sec) [ -47320.8800] [12117] [depth= 1] . ( 501 sec) [ -47320.2750] [12125] [depth= 1] . ( 501 sec) [ -47318.0366] [12116] [depth= 1] . ( 502 sec) [ -47314.0221] [12111] [depth= 3] . ( 503 sec) [ -47221.7564] [12071] [depth= 8] . ( 520 sec) [ -47213.2994] [12072] [depth= 1] . ( 520 sec) [ -47210.3313] [12071] [depth= 1] . ( 521 sec) [ -47201.6613] [12062] [depth= 7] . ( 522 sec) [ -47196.6346] [12062] [depth= 2] . ( 537 sec) [ -47176.7589] [12062] [depth= 2] . ( 537 sec) [ -47154.6405] [12052] [depth= 8] . ( 582 sec) [ -47153.0785] [12044] [depth= 1] . ( 583 sec) [ -47151.0702] [12051] [depth= 1] . ( 583 sec) [ -47136.7074] [12048] [depth= 9] . ( 584 sec) [ -47127.6108] [12048] [depth= 2] . ( 584 sec) [ -47116.5195] [12056] [depth= 1] . ( 585 sec) [ -47113.2190] [12048] [depth= 1] . ( 628 sec) [ -47100.5490] [12064] [depth= 9] . ( 643 sec) [ -47096.6752] [12057] [depth= 1] . ( 644 sec) [ -47091.3456] [12071] [depth= 1] . ( 656 sec) [ -47091.1907] [12097] [depth= 1] . ( 682 sec) [ -47085.9021] [12099] [depth= 1] . ( 683 sec) [ -47085.1891] [12100] [depth= 1] . ( 683 sec) [ -47081.7725] [12099] [depth= 2] . ( 684 sec) [ -47069.8233] [12092] [depth= 2] . ( 685 sec) [ -47025.4167] [12068] [depth= 6] . ( 716 sec) [ -47021.7101] [12071] [depth= 1] . ( 717 sec) [ -47006.8285] [12061] [depth= 1] . ( 718 sec) [ -47005.4407] [12064] [depth= 1] . ( 748 sec) [ -47003.6525] [12066] [depth= 1] . ( 748 sec) [ -46999.4632] [12067] [depth= 1] . ( 782 sec) [ -46983.9546] [12062] [depth= 2] . ( 782 sec) [ -46981.9776] [12062] [depth= 1] . ( 783 sec) [ -46978.2554] [12061] [depth= 1] . ( 783 sec) [ -46970.9969] [12054] [depth= 3] . ( 784 sec) [ -46956.7288] [12053] [depth= 4] . ( 785 sec) [ -46948.0640] [12051] [depth= 1] . ( 785 sec) [ -46935.8895] [12052] [depth= 1] . ( 786 sec) [ -46926.0912] [12042] [depth= 1] . ( 800 sec) [ -46925.9681] [12042] [depth= 1] . ( 816 sec) [ -46916.4184] [12042] [depth= 2] . ( 817 sec) [ -46915.4127] [12036] [depth= 1] . ( 818 sec) [ -46914.0907] [12030] [depth= 3] . ( 818 sec) [ -46913.8628] [12041] [depth= 1] . ( 819 sec) [ -46908.4518] [12030] [depth= 1] . ( 828 sec) [ -46902.4678] [12058] [depth= 2] . ( 913 sec) [ -46901.2803] [12058] [depth= 3] . ( 913 sec) [ -46899.6252] [12063] [depth= 2] . ( 914 sec) [ -46897.1701] [12065] [depth= 1] . ( 921 sec) [ -46896.0758] [12062] [depth= 3] . ( 929 sec) [ -46895.7509] [12064] [depth= 5] . ( 930 sec) [ -46895.2418] [12079] [depth= 1] . ( 931 sec) [ -46890.1239] [12084] [depth= 1] . ( 939 sec) [ -46889.0930] [12097] [depth= 1] . ( 939 sec) [ -46885.0677] [12102] [depth= 1] . ( 940 sec) [ -46813.3519] [12089] [depth= 13] . ( 940 sec) [ -46798.2024] [12093] [depth= 1] . ( 957 sec) [ -46797.2457] [12089] [depth= 2] . ( 965 sec) [ -46795.7597] [12088] [depth= 2] . ( 966 sec) [ -46795.5916] [12095] [depth= 3] . ( 973 sec) [ -46792.7603] [12082] [depth= 4] . ( 974 sec) [ -46791.6010] [12078] [depth= 1] . ( 981 sec) [ -46790.8650] [12081] [depth= 1] . ( 989 sec) [ -46788.1888] [12094] [depth= 2] . ( 990 sec) [ -46776.4789] [12086] [depth= 2] . ( 991 sec) [ -46775.8895] [12086] [depth= 1] . ( 991 sec) [ -46774.0810] [12085] [depth= 6] . ( 992 sec) [ -46770.7756] [12081] [depth= 1] . ( 992 sec) [ -46769.7631] [12083] [depth= 1] . ( 994 sec) [ -46767.9990] [12079] [depth= 1] . ( 994 sec) [ -46767.3861] [12082] [depth= 1] . ( 1002 sec) [ -46763.5856] [12085] [depth= 1] . ( 1018 sec) [ -46762.0660] [12098] [depth= 1] . ( 1034 sec) [ -46757.0312] [12092] [depth= 2] . ( 1035 sec) [ -46754.9986] [12091] [depth= 3] . ( 1036 sec) [ -46753.7060] [12086] [depth= 1] . ( 1036 sec) [ -46749.7739] [12088] [depth= 1] . ( 1037 sec) [ -46737.0660] [12085] [depth= 1] . ( 1045 sec) [ -46723.9652] [12083] [depth= 1] . ( 1045 sec) [ -46721.4606] [12088] [depth= 3] . ( 1046 sec) [ -46712.4796] [12083] [depth= 2] . ( 1047 sec) [ -46711.2387] [12080] [depth= 5] . ( 1048 sec) [ -46710.3495] [12085] [depth= 1] . ( 1048 sec) [ -46699.8862] [12080] [depth= 3] . ( 1048 sec) [ -46696.2213] [12069] [depth= 1] . ( 1050 sec) [ -46694.5415] [12059] [depth= 2] . ( 1050 sec) [ -46690.9523] [12060] [depth= 2] . ( 1051 sec) [ -46684.0113] [12065] [depth= 2] . ( 1052 sec) [ -46675.0770] [12068] [depth= 1] . ( 1053 sec) [ -46670.5253] [12066] [depth= 1] . ( 1054 sec) [ -46670.4262] [12071] [depth= 2] . ( 1086 sec) [ -46663.3657] [12055] [depth= 2] . ( 1087 sec) [ -46659.6084] [12062] [depth= 1] . ( 1088 sec) [ -46650.9791] [12055] [depth= 1] . ( 1096 sec) [ -46649.2899] [12058] [depth= 1] . ( 1097 sec) [ -46626.3076] [12047] [depth= 2] . ( 1098 sec) [ -46624.9098] [12051] [depth= 1] . ( 1106 sec) [ -46624.4729] [12054] [depth= 1] . ( 1123 sec) [ -46623.9663] [12052] [depth= 1] . ( 1130 sec) [ -46623.8856] [12050] [depth= 1] . ( 1130 sec) [ -46610.9275] [12051] [depth= 1] . ( 1132 sec) [ -46609.7495] [12049] [depth= 1] . ( 1132 sec) [ -46604.8630] [12044] [depth= 2] . ( 1135 sec) [ -46602.9775] [12048] [depth= 1] . ( 1136 sec) [ -46602.5337] [12046] [depth= 1] . ( 1145 sec) [ -46602.3691] [12048] [depth= 1] . ( 1146 sec) [ -46601.7976] [12046] [depth= 1] . ( 1147 sec) [ -46601.2352] [12044] [depth= 2] . ( 1148 sec) [ -46600.6595] [12047] [depth= 3] . ( 1149 sec) [ -46598.9312] [12047] [depth= 1] . ( 1158 sec) [ -46596.9384] [12052] [depth= 4] . ( 1160 sec) [ -46591.6508] [12046] [depth= 2] . ( 1161 sec) [ -46590.2471] [12046] [depth= 1] . ( 1169 sec) [ -46590.2074] [12049] [depth= 2] . ( 1185 sec) [ -46590.0121] [12048] [depth= 1] . ( 1186 sec) [ -46589.2468] [12047] [depth= 2] . ( 1187 sec) [ -46588.3560] [12052] [depth= 1] . ( 1205 sec) [ -46378.7039] [Branch lengths ] . ( 1221 sec) [ -46324.2822] [GTR parameters ] . ( 1222 sec) [ -46323.4563] [Alpha ][ 0.483609] . ( 1259 sec) [ -46323.0254] [12052] [depth= 1] . ( 1273 sec) [ -46318.8306] [12038] [depth= 3] . ( 1323 sec) [ -46315.9451] [12040] [depth= 1] . ( 1400 sec) [ -46315.5899] [12044] [depth= 1] . ( 1431 sec) [ -46307.6306] [12033] [depth= 8] . ( 1432 sec) [ -46302.9046] [11925] [depth= 8] . ( 1476 sec) [ -46288.3400] [11913] [depth= 4] . ( 1477 sec) [ -46286.9143] [11910] [depth= 3] . ( 1493 sec) [ -46274.9523] [11881] [depth= 3] . ( 1502 sec) [ -46261.6484] [11865] [depth= 2] . ( 1511 sec) [ -46254.6368] [11858] [depth= 2] . ( 1565 sec) [ -46242.5033] [11855] [depth= 1] . ( 1566 sec) [ -46240.5278] [11857] [depth= 1] . ( 1566 sec) [ -46222.1225] [11843] [depth= 1] . ( 1574 sec) [ -46215.4575] [11844] [depth= 3] . ( 1575 sec) [ -46206.1581] [11840] [depth= 4] . ( 1589 sec) [ -46192.2563] [11844] [depth= 1] . ( 1650 sec) [ -46191.5602] [11841] [depth= 1] . ( 1718 sec) [ -46185.2488] [11834] [depth= 1] . ( 1741 sec) [ -46182.5141] [11831] [depth= 1] . ( 1742 sec) [ -46182.2229] [11831] [depth= 2] . ( 1764 sec) [ -46181.7034] [11832] [depth= 1] . ( 1772 sec) [ -46180.8448] [11832] [depth= 1] . ( 1847 sec) [ -46159.4203] [11857] [depth= 2] . ( 1854 sec) [ -46146.1575] [11903] [depth= 1] . ( 1872 sec) [ -46146.0317] [11903] [depth= 1] . ( 1873 sec) [ -46145.4626] [11900] [depth= 1] . ( 1907 sec) [ -46144.7295] [11893] [depth= 3] . ( 1907 sec) [ -46144.0562] [11888] [depth= 2] . ( 1924 sec) [ -46143.1183] [11886] [depth= 3] . ( 1924 sec) [ -46142.1741] [11883] [depth= 1] . ( 1984 sec) [ -46140.4761] [11882] [depth= 3] . ( 1992 sec) [ -46138.0089] [11877] [depth= 1] . ( 2038 sec) [ -46137.3277] [11876] [depth= 6] . ( 2067 sec) [ -46133.8793] [11916] [depth= 2] . ( 2067 sec) [ -46121.7826] [11922] [depth= 1] . ( 2107 sec) [ -46121.3954] [11922] [depth= 1] . ( 2187 sec) [ -46119.0653] [11926] [depth= 1] . ( 2188 sec) [ -46118.4408] [11925] [depth= 1] . ( 2227 sec) [ -46116.8902] [11924] [depth= 6] . ( 2227 sec) [ -46102.6751] [11911] [depth= 4] . ( 2228 sec) [ -46101.2403] [11913] [depth= 1] . ( 2272 sec) [ -46101.1311] [11913] [depth= 1] . ( 2306 sec) [ -46099.0071] [11914] [depth= 1] . ( 2307 sec) [ -46086.0764] [11895] [depth= 2] . ( 2422 sec) [ -46083.2982] [11889] [depth= 1] . ( 2436 sec) [ -46083.2741] [11894] [depth= 1] . ( 2436 sec) [ -46083.0040] [11893] [depth= 4] . ( 2533 sec) [ -46082.4286] [11893] [depth= 1] . ( 2533 sec) [ -46081.4198] [11889] [depth= 1] . ( 2535 sec) [ -46079.6583] [11892] [depth= 1] . ( 2535 sec) [ -46078.1286] [11897] [depth= 1] . ( 2604 sec) [ -46077.9752] [11909] [depth= 3] . ( 2612 sec) [ -46077.8809] [11903] [depth= 1] . ( 2613 sec) [ -46074.0626] [11897] [depth= 1] . ( 2622 sec) [ -46073.2212] [11889] [depth= 2] . ( 2623 sec) [ -46072.2265] [11888] [depth= 1] . ( 2672 sec) [ -46071.4603] [11892] [depth= 1] . ( 2672 sec) [ -46061.0992] [11890] [depth= 2] . ( 2681 sec) [ -46059.7783] [11888] [depth= 2] . ( 2747 sec) [ -46058.4654] [11893] [depth= 2] . ( 2762 sec) [ -46058.1752] [11897] [depth= 1] . ( 2822 sec) [ -46057.5985] [11893] [depth= 1] . ( 2874 sec) [ -46055.6756] [11891] [depth= 1] . ( 2883 sec) [ -46055.4224] [11887] [depth= 1] . ( 2892 sec) [ -45983.9724] [Branch lengths ] . ( 2907 sec) [ -45980.0850] [GTR parameters ] . ( 2908 sec) [ -45978.4557] [Alpha ][ 0.507596] . ( 2945 sec) [ -45978.3738] [11887] [depth= 1] . ( 2953 sec) [ -45978.0063] [11885] [depth= 1] . ( 2967 sec) [ -45977.9727] [11887] [depth= 1] . ( 3115 sec) [ -45976.4800] [11883] [depth= 1] . ( 3236 sec) [ -45976.4002] [11879] [depth= 1] . ( 3295 sec) [ -45976.0313] [11875] [depth= 1] . ( 3310 sec) [ -45975.8085] [11876] [depth= 2] . ( 3336 sec) [ -45975.7141] [11877] [depth= 1] . ( 3371 sec) [ -45973.1477] [11870] [depth= 1] . ( 3437 sec) [ -45966.3125] [11878] [depth= 2] . ( 3498 sec) [ -45966.2797] [11878] [depth= 1] . ( 3602 sec) [ -45966.1873] [11877] [depth= 1] . ( 3612 sec) [ -45966.1643] [11881] [depth= 2] . ( 3612 sec) [ -45966.0023] [11882] [depth= 1] . ( 3734 sec) [ -45964.7010] [11881] [depth= 4] . ( 3763 sec) [ -45961.8943] [11882] [depth= 1] . ( 3845 sec) [ -45961.2138] [11883] [depth= 1] . ( 3845 sec) [ -45961.1473] [11882] [depth= 1] . ( 3883 sec) [ -45961.1248] [11881] [depth= 3] . ( 4045 sec) [ -45960.7711] [11880] [depth= 1] . ( 4080 sec) [ -45960.6026] [11885] [depth= 2] . ( 4091 sec) [ -45960.3417] [11886] [depth= 1] . ( 4096 sec) [ -45960.3224] [11886] [depth= 1] . ( 4108 sec) [ -45959.9934] [11886] [depth= 2] . ( 4211 sec) [ -45959.6169] [11895] [depth= 1] . ( 4245 sec) [ -45952.3625] [11891] [depth= 1] . ( 4246 sec) [ -45952.1624] [11894] [depth= 1] . ( 4247 sec) [ -45952.0726] [11900] [depth= 1] . ( 4383 sec) [ -45951.0292] [11897] [depth= 1] . ( 4384 sec) [ -45951.0020] [11897] [depth= 1] . ( 4485 sec) [ -45950.7527] [11897] [depth= 1] . ( 4501 sec) [ -45950.7369] [11894] [depth= 1] . ( 4545 sec) [ -45917.8139] [Branch lengths ] . ( 4554 sec) [ -45917.3256] [GTR parameters ] . ( 4555 sec) [ -45916.5269] [Alpha ][ 0.523926] . ( 4576 sec) [ -45916.4088] [11894] [depth= 1] . ( 5005 sec) [ -45915.6362] [11896] [depth= 1] . ( 5112 sec) [ -45914.3437] [11894] [depth= 1] . ( 5138 sec) [ -45914.3178] [11894] [depth= 1] . ( 5300 sec) [ -45914.2411] [11894] [depth= 1] . ( 5301 sec) [ -45914.2214] [11894] [depth= 1] . ( 5302 sec) [ -45914.1250] [11893] [depth= 1] . ( 5303 sec) [ -45913.6841] [11893] [depth= 1] . ( 5317 sec) [ -45913.4811] [11897] [depth= 2] . ( 5619 sec) [ -45910.7959] [11896] [depth= 4] . ( 5681 sec) [ -45907.9987] [11888] [depth= 2] . ( 5847 sec) [ -45907.9748] [11888] [depth= 1] . ( 5947 sec) [ -45907.4952] [11884] [depth= 1] . ( 6275 sec) [ -45907.3211] [11884] [depth= 1] . ( 6300 sec) [ -45907.2322] [11883] [depth= 1] . ( 6338 sec) [ -45889.3207] [Branch lengths ] . ( 6349 sec) [ -45889.1225] [GTR parameters ] . ( 6350 sec) [ -45888.9220] [Alpha ][ 0.531884] . ( 6385 sec) [ -45888.8587] [11883] [depth= 1] . ( 6827 sec) [ -45888.8364] [11883] [depth= 2] . ( 7215 sec) [ -45888.6529] [11877] [depth= 1] . ( 7433 sec) [ -45888.3569] [11880] [depth= 1] . ( 7711 sec) [ -45878.1021] [Branch lengths ] . ( 7717 sec) [ -45877.9515] [GTR parameters ] . ( 7718 sec) [ -45877.9081] [Alpha ][ 0.535547] . ( 7732 sec) [ -45877.8718] [11880] [depth= 1] . ( 8211 sec) [ -45877.7164] [11882] [depth= 2] . ( 8216 sec) [ -45876.4382] [11876] [depth= 4] . ( 8469 sec) [ -45876.3394] [11880] [depth= 1] . ( 8690 sec) [ -45875.5896] [11886] [depth= 1] . ( 8953 sec) [ -45874.2849] [11885] [depth= 1] . ( 8969 sec) [ -45868.0754] [Branch lengths ] . ( 8974 sec) [ -45867.9801] [GTR parameters ] . ( 8975 sec) [ -45867.9789] [Alpha ][ 0.536138] . ( 8997 sec) [ -45867.9603] [11885] [depth= 1] . (10245 sec) [ -45865.4437] [Branch lengths ] . (10251 sec) [ -45865.3810] [GTR parameters ] . (10251 sec) [ -45865.3810] [Alpha ][ 0.536138] . (10266 sec) [ -45865.3710] [11885] [depth= 1] . (11521 sec) [ -45863.9473] [Branch lengths ] . (11524 sec) [ -45863.9186] [GTR parameters ] . (11525 sec) [ -45863.9186] [Alpha ][ 0.536138] . (12799 sec) [ -45862.1242] [Branch lengths ] . (13063 sec) [ -45860.6983] [Branch lengths ] . (13063 sec) [ -45860.6983] [Topology ] . (13069 sec) [ -45860.6050] [Topology ] . (13075 sec) [ -45860.5705] [Topology ] . (13080 sec) [ -45860.5517] [Topology ] . (13086 sec) [ -45860.5399] [Topology ] . (13092 sec) [ -45860.5321] [Topology ] . (13097 sec) [ -45860.5267] [Topology ] . (13104 sec) [ -45860.4685] [GTR parameters ] . (13104 sec) [ -45860.4637] [Alpha ][ 0.534938] . (13105 sec) [ -45860.4637] [Topology ] . (13110 sec) [ -45860.4508] [Topology ] . (13116 sec) [ -45860.4431] [Topology ] . (13122 sec) [ -45860.4378] [Topology ] . (13127 sec) [ -45860.4342] [Topology ] . (13133 sec) [ -45860.4315] [Topology ] . (13139 sec) [ -45860.4297] [Topology ] . (13142 sec) [ -45860.4262] [GTR parameters ] . (13142 sec) [ -45860.4262] [Alpha ][ 0.534938] . (13142 sec) [ -45860.4262] [Topology ] . (13148 sec) [ -45860.4239] [Topology ] . (13154 sec) [ -45860.4223] [Topology ] . (13159 sec) [ -45860.4211] [Topology ] . (13165 sec) [ -45860.4202] [Topology ] . (13167 sec) [ -45860.4199] [GTR parameters ] . (13167 sec) [ -45860.4197] [Alpha ][ 0.534403] . (13168 sec) [ -45860.4197] [Topology ] . (13173 sec) [ -45860.4187] [Topology ] . (13174 sec) [ -45860.4187] [GTR parameters ] . (13175 sec) [ -45860.4187] [Alpha ][ 0.534403] . Checking for NNIs, optimizing five branches... . (13226 sec) [ -45860.0758] [Topology ] . Checking for NNIs, optimizing five branches... . (13277 sec) [ -45860.0167] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -45860.016707. . Printing the most likely tree in file 'nucleic_M2623_139x1044_2006.phy_phyml_tree.txt'... . Time used 3h42m8s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 10971.29user 0.00system 3:42:13elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps