.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1376_36x484_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 392 patterns found. (out of a total of 484 sites) . 132 sites without polymorphism (27.27%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -11637.9226] [Alpha ][ 0.518665] . ( 2 sec) [ -11631.6742] [ 1985] [depth= 2] . ( 3 sec) [ -11621.6295] [ 1984] [depth= 1] . ( 3 sec) [ -11620.5240] [ 1985] [depth= 1] . ( 6 sec) [ -11619.8317] [ 1982] [depth= 1] . ( 8 sec) [ -11609.7200] [ 1988] [depth= 2] . ( 9 sec) [ -11608.6178] [ 1989] [depth= 1] . ( 10 sec) [ -11607.0074] [ 1990] [depth= 2] . ( 10 sec) [ -11599.9160] [ 1984] [depth= 2] . ( 12 sec) [ -11597.2386] [ 1984] [depth= 1] . ( 13 sec) [ -11596.8186] [ 1987] [depth= 1] . ( 29 sec) [ -11595.2558] [ 1989] [depth= 1] . ( 29 sec) [ -11593.4193] [ 1987] [depth= 1] . ( 37 sec) [ -11592.3146] [ 1989] [depth= 1] . ( 39 sec) [ -11588.2502] [ 1988] [depth= 1] . ( 40 sec) [ -11583.5716] [ 1989] [depth= 1] . ( 43 sec) [ -11582.8126] [ 1993] [depth= 1] . ( 43 sec) [ -11582.5599] [ 1991] [depth= 1] . ( 44 sec) [ -11579.7474] [ 1987] [depth= 1] . ( 45 sec) [ -11578.3774] [ 1986] [depth= 1] . ( 45 sec) [ -11576.9045] [ 1987] [depth= 1] . ( 54 sec) [ -11575.7663] [ 1986] [depth= 1] . ( 60 sec) [ -11538.2300] [Branch lengths ] . ( 61 sec) [ -11535.8415] [Alpha ][ 0.600355] . ( 65 sec) [ -11535.3104] [ 1985] [depth= 1] . ( 95 sec) [ -11534.6567] [ 1985] [depth= 1] . ( 105 sec) [ -11534.4673] [ 1985] [depth= 1] . ( 131 sec) [ -11530.7399] [Branch lengths ] . ( 131 sec) [ -11530.6210] [Alpha ][ 0.620040] . ( 205 sec) [ -11530.0763] [Branch lengths ] . ( 205 sec) [ -11530.0763] [Topology ] . ( 208 sec) [ -11530.0026] [Topology ] . ( 211 sec) [ -11529.9748] [Topology ] . ( 214 sec) [ -11529.9604] [Topology ] . ( 218 sec) [ -11529.9526] [Topology ] . ( 221 sec) [ -11529.9483] [Topology ] . ( 224 sec) [ -11529.9460] [Topology ] . ( 224 sec) [ -11529.8830] [Alpha ][ 0.635152] . ( 225 sec) [ -11529.8830] [Topology ] . ( 228 sec) [ -11529.8730] [Topology ] . ( 231 sec) [ -11529.8682] [Topology ] . ( 234 sec) [ -11529.8656] [Topology ] . ( 237 sec) [ -11529.8641] [Topology ] . ( 241 sec) [ -11529.8633] [Topology ] . ( 241 sec) [ -11529.8621] [Alpha ][ 0.637238] . ( 241 sec) [ -11529.8621] [Topology ] . ( 245 sec) [ -11529.8613] [Topology ] . ( 245 sec) [ -11529.8613] [Alpha ][ 0.637238] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11529.861279. . Printing the most likely tree in file 'proteic_M1376_36x484_2003.phy_phyml_tree.txt'... . Time used 0h4m30s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 269.14user 0.00system 4:30.19elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps