.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1378_18x1561_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 855 patterns found. (out of a total of 1561 sites) . 765 sites without polymorphism (49.01%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16272.8201] [Alpha ][ 0.500960] . ( 5 sec) [ -16264.1231] [ 2165] [depth= 5] . ( 6 sec) [ -16247.5499] [ 2160] [depth= 3] . ( 7 sec) [ -16206.3558] [ 2156] [depth= 2] . ( 8 sec) [ -16188.7553] [ 2153] [depth= 2] . ( 9 sec) [ -16172.6647] [ 2156] [depth= 1] . ( 10 sec) [ -16159.8939] [ 2154] [depth= 2] . ( 10 sec) [ -16152.7174] [ 2157] [depth= 1] . ( 11 sec) [ -16152.5892] [ 2152] [depth= 6] . ( 11 sec) [ -16107.1498] [ 2147] [depth= 4] . ( 13 sec) [ -16105.9109] [ 2144] [depth= 3] . ( 14 sec) [ -16089.6447] [ 2141] [depth= 1] . ( 15 sec) [ -16087.1063] [ 2134] [depth= 1] . ( 17 sec) [ -16080.6675] [ 2136] [depth= 2] . ( 18 sec) [ -16079.8218] [ 2139] [depth= 2] . ( 19 sec) [ -16076.9515] [ 2138] [depth= 1] . ( 24 sec) [ -16076.7579] [ 2136] [depth= 2] . ( 28 sec) [ -16036.3551] [Branch lengths ] . ( 29 sec) [ -16035.0901] [Alpha ][ 0.458010] . ( 46 sec) [ -16033.9401] [ 2139] [depth= 1] . ( 48 sec) [ -16033.2307] [ 2138] [depth= 1] . ( 51 sec) [ -16032.6792] [ 2134] [depth= 1] . ( 60 sec) [ -16031.4201] [ 2138] [depth= 2] . ( 62 sec) [ -16025.1544] [Branch lengths ] . ( 62 sec) [ -16025.1484] [Alpha ][ 0.460801] . ( 79 sec) [ -16025.1280] [ 2135] [depth= 1] . ( 80 sec) [ -16018.5829] [ 2131] [depth= 1] . ( 100 sec) [ -16016.7627] [Branch lengths ] . ( 100 sec) [ -16016.7591] [Alpha ][ 0.462982] . ( 139 sec) [ -16016.6622] [Branch lengths ] . ( 140 sec) [ -16016.6622] [Topology ] . ( 143 sec) [ -16016.6554] [Topology ] . ( 145 sec) [ -16016.6534] [Topology ] . ( 148 sec) [ -16016.6526] [Topology ] . ( 149 sec) [ -16016.6521] [Alpha ][ 0.463697] . ( 149 sec) [ -16016.6521] [Topology ] . ( 152 sec) [ -16016.6517] [Topology ] . ( 152 sec) [ -16016.6517] [Alpha ][ 0.463697] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16016.651717. . Printing the most likely tree in file 'proteic_M1378_18x1561_2003.phy_phyml_tree.txt'... . Time used 0h3m0s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 174.98user 0.00system 2:59.70elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps