.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1392_57x430_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 389 patterns found. (out of a total of 430 sites) . 150 sites without polymorphism (34.88%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 54Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -8287.8174] [Alpha ][ 0.500960] . ( 4 sec) [ -8282.0664] [ 1252] [depth= 1] . ( 5 sec) [ -8281.7063] [ 1254] [depth= 1] . ( 6 sec) [ -8276.3109] [ 1251] [depth= 2] . ( 17 sec) [ -8271.1817] [ 1250] [depth= 1] . ( 18 sec) [ -8268.4324] [ 1249] [depth= 1] . ( 20 sec) [ -8258.8412] [ 1248] [depth= 2] . ( 22 sec) [ -8251.3287] [ 1246] [depth= 3] . ( 23 sec) [ -8250.9587] [ 1247] [depth= 1] . ( 28 sec) [ -8250.1630] [ 1247] [depth= 1] . ( 30 sec) [ -8248.6685] [ 1246] [depth= 1] . ( 32 sec) [ -8248.2108] [ 1245] [depth= 1] . ( 33 sec) [ -8247.4062] [ 1246] [depth= 1] . ( 37 sec) [ -8247.1577] [ 1246] [depth= 1] . ( 38 sec) [ -8246.7235] [ 1246] [depth= 1] . ( 43 sec) [ -8241.4009] [ 1246] [depth= 3] . ( 43 sec) [ -8239.6538] [ 1244] [depth= 1] . ( 44 sec) [ -8238.4411] [ 1244] [depth= 1] . ( 46 sec) [ -8238.3013] [ 1245] [depth= 1] . ( 47 sec) [ -8238.2470] [ 1245] [depth= 1] . ( 48 sec) [ -8238.1333] [ 1246] [depth= 2] . ( 52 sec) [ -8236.1099] [ 1245] [depth= 1] . ( 54 sec) [ -8235.1795] [ 1248] [depth= 2] . ( 57 sec) [ -8226.4629] [ 1246] [depth= 2] . ( 63 sec) [ -8226.1371] [ 1244] [depth= 3] . ( 64 sec) [ -8225.9515] [ 1241] [depth= 2] . ( 66 sec) [ -8214.9763] [ 1240] [depth= 3] . ( 67 sec) [ -8213.4369] [ 1237] [depth= 2] . ( 68 sec) [ -8207.3726] [ 1234] [depth= 3] . ( 69 sec) [ -8207.3301] [ 1237] [depth= 1] . ( 70 sec) [ -8207.2706] [ 1238] [depth= 1] . ( 71 sec) [ -8206.5969] [ 1239] [depth= 1] . ( 71 sec) [ -8206.4048] [ 1239] [depth= 1] . ( 83 sec) [ -8205.3166] [ 1241] [depth= 1] . ( 84 sec) [ -8205.0649] [ 1240] [depth= 1] . ( 85 sec) [ -8204.6930] [ 1243] [depth= 2] . ( 104 sec) [ -8204.5696] [ 1243] [depth= 1] . ( 118 sec) [ -8204.5483] [ 1243] [depth= 4] . ( 119 sec) [ -8204.0844] [ 1243] [depth= 3] . ( 120 sec) [ -8204.0652] [ 1243] [depth= 2] . ( 120 sec) [ -8203.9225] [ 1243] [depth= 2] . ( 124 sec) [ -8202.0665] [ 1244] [depth= 1] . ( 125 sec) [ -8202.0396] [ 1244] [depth= 4] . ( 126 sec) [ -8202.0149] [ 1244] [depth= 3] . ( 126 sec) [ -8201.7570] [ 1245] [depth= 4] . ( 130 sec) [ -8201.6044] [ 1245] [depth= 1] . ( 131 sec) [ -8201.5626] [ 1245] [depth= 3] . ( 132 sec) [ -8201.4399] [ 1245] [depth= 2] . ( 132 sec) [ -8201.2941] [ 1245] [depth= 2] . ( 140 sec) [ -8179.0267] [Branch lengths ] . ( 141 sec) [ -8178.6907] [Alpha ][ 0.534282] . ( 188 sec) [ -8178.4620] [ 1247] [depth= 2] . ( 295 sec) [ -8177.1880] [ 1246] [depth= 4] . ( 305 sec) [ -8177.1747] [ 1246] [depth= 3] . ( 308 sec) [ -8177.1141] [ 1246] [depth= 2] . ( 309 sec) [ -8174.7627] [ 1245] [depth= 1] . ( 318 sec) [ -8174.6109] [ 1245] [depth= 2] . ( 343 sec) [ -8171.7796] [Branch lengths ] . ( 344 sec) [ -8171.6991] [Alpha ][ 0.551102] . ( 554 sec) [ -8170.9909] [Branch lengths ] . ( 554 sec) [ -8170.9909] [Topology ] . ( 560 sec) [ -8170.8159] [Topology ] . ( 566 sec) [ -8170.5220] [Topology ] . ( 571 sec) [ -8170.4235] [Topology ] . ( 579 sec) [ -8170.3745] [Topology ] . ( 585 sec) [ -8170.3462] [Topology ] . ( 591 sec) [ -8170.3280] [Topology ] . ( 597 sec) [ -8170.3157] [Topology ] . ( 598 sec) [ -8170.2626] [Alpha ][ 0.564768] . ( 598 sec) [ -8170.2626] [Topology ] . ( 604 sec) [ -8170.2486] [Topology ] . ( 610 sec) [ -8170.2391] [Topology ] . ( 616 sec) [ -8170.2325] [Topology ] . ( 621 sec) [ -8170.2280] [Topology ] . ( 628 sec) [ -8170.2248] [Topology ] . ( 635 sec) [ -8170.2226] [Topology ] . ( 636 sec) [ -8170.2216] [Alpha ][ 0.566652] . ( 636 sec) [ -8170.2216] [Topology ] . ( 643 sec) [ -8170.2198] [Topology ] . ( 649 sec) [ -8170.2186] [Topology ] . ( 656 sec) [ -8170.2177] [Topology ] . ( 657 sec) [ -8170.2177] [Alpha ][ 0.567219] . ( 658 sec) [ -8170.2177] [Topology ] . ( 665 sec) [ -8170.2170] [Topology ] . ( 665 sec) [ -8170.2170] [Alpha ][ 0.567219] . Checking for NNIs, optimizing five branches... . ( 705 sec) [ -8170.2167] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8170.216729. . Printing the most likely tree in file 'proteic_M1392_57x430_2003.phy_phyml_tree.txt'... . Time used 0h12m27s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 731.01user 0.00system 12:29.17elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps