.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1487_52x981_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 623 patterns found. (out of a total of 981 sites) . 470 sites without polymorphism (47.91%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 78Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -16605.2876] [Alpha ][ 0.500960] . ( 4 sec) [ -16595.4016] [ 2560] [depth= 1] . ( 5 sec) [ -16593.3251] [ 2559] [depth= 1] . ( 8 sec) [ -16591.2562] [ 2558] [depth= 1] . ( 25 sec) [ -16581.8807] [ 2559] [depth= 1] . ( 26 sec) [ -16572.7899] [ 2558] [depth= 1] . ( 31 sec) [ -16569.0639] [ 2559] [depth= 1] . ( 38 sec) [ -16562.4481] [ 2557] [depth= 1] . ( 42 sec) [ -16561.5336] [ 2558] [depth= 1] . ( 51 sec) [ -16554.3289] [ 2558] [depth= 1] . ( 52 sec) [ -16550.8681] [ 2558] [depth= 1] . ( 53 sec) [ -16542.7190] [ 2558] [depth= 3] . ( 54 sec) [ -16541.9999] [ 2558] [depth= 1] . ( 64 sec) [ -16525.8312] [ 2553] [depth= 3] . ( 66 sec) [ -16522.8339] [ 2552] [depth= 1] . ( 67 sec) [ -16520.3052] [ 2551] [depth= 1] . ( 68 sec) [ -16517.7199] [ 2551] [depth= 1] . ( 70 sec) [ -16516.4984] [ 2556] [depth= 2] . ( 74 sec) [ -16507.2109] [ 2559] [depth= 3] . ( 76 sec) [ -16499.0775] [ 2555] [depth= 3] . ( 77 sec) [ -16486.0382] [ 2550] [depth= 1] . ( 78 sec) [ -16470.9384] [ 2551] [depth= 1] . ( 79 sec) [ -16469.5869] [ 2550] [depth= 2] . ( 80 sec) [ -16469.4201] [ 2549] [depth= 1] . ( 81 sec) [ -16463.8042] [ 2551] [depth= 1] . ( 85 sec) [ -16460.9952] [ 2552] [depth= 1] . ( 86 sec) [ -16458.6746] [ 2547] [depth= 1] . ( 89 sec) [ -16456.2940] [ 2549] [depth= 1] . ( 90 sec) [ -16455.7503] [ 2546] [depth= 1] . ( 91 sec) [ -16445.6869] [ 2546] [depth= 1] . ( 92 sec) [ -16444.6771] [ 2545] [depth= 1] . ( 93 sec) [ -16439.3687] [ 2548] [depth= 1] . ( 97 sec) [ -16438.0344] [ 2551] [depth= 1] . ( 98 sec) [ -16434.4046] [ 2548] [depth= 1] . ( 101 sec) [ -16430.2810] [ 2549] [depth= 1] . ( 108 sec) [ -16416.3164] [ 2548] [depth= 1] . ( 118 sec) [ -16415.7550] [ 2548] [depth= 1] . ( 120 sec) [ -16414.6868] [ 2548] [depth= 1] . ( 121 sec) [ -16413.3543] [ 2549] [depth= 2] . ( 122 sec) [ -16413.0612] [ 2546] [depth= 3] . ( 123 sec) [ -16407.3849] [ 2545] [depth= 3] . ( 125 sec) [ -16405.8978] [ 2546] [depth= 1] . ( 133 sec) [ -16405.3278] [ 2545] [depth= 1] . ( 140 sec) [ -16404.8001] [ 2546] [depth= 1] . ( 141 sec) [ -16402.0362] [ 2545] [depth= 3] . ( 147 sec) [ -16401.4646] [ 2546] [depth= 1] . ( 150 sec) [ -16321.5849] [Branch lengths ] . ( 151 sec) [ -16300.1920] [Alpha ][ 0.362572] . ( 188 sec) [ -16294.2916] [ 2545] [depth= 1] . ( 240 sec) [ -16294.2145] [ 2546] [depth= 1] . ( 241 sec) [ -16293.2434] [ 2546] [depth= 1] . ( 285 sec) [ -16286.6503] [ 2546] [depth= 3] . ( 288 sec) [ -16285.1681] [ 2545] [depth= 1] . ( 291 sec) [ -16284.9352] [ 2545] [depth= 1] . ( 292 sec) [ -16284.8298] [ 2543] [depth= 2] . ( 323 sec) [ -16277.9422] [Branch lengths ] . ( 324 sec) [ -16277.8551] [Alpha ][ 0.369611] . ( 425 sec) [ -16277.5752] [ 2541] [depth= 1] . ( 497 sec) [ -16277.0647] [Branch lengths ] . ( 499 sec) [ -16277.0386] [Alpha ][ 0.373691] . ( 499 sec) [ -16277.0386] [Topology ] . ( 507 sec) [ -16276.9571] [Topology ] . ( 515 sec) [ -16276.9103] [Topology ] . ( 523 sec) [ -16276.8919] [Topology ] . ( 531 sec) [ -16276.8822] [Topology ] . ( 538 sec) [ -16276.8767] [Topology ] . ( 546 sec) [ -16276.8734] [Topology ] . ( 554 sec) [ -16276.8715] [Topology ] . ( 562 sec) [ -16276.8703] [Topology ] . ( 564 sec) [ -16276.8569] [Alpha ][ 0.376619] . ( 564 sec) [ -16276.8569] [Topology ] . ( 572 sec) [ -16276.8537] [Topology ] . ( 580 sec) [ -16276.8519] [Topology ] . ( 588 sec) [ -16276.8508] [Topology ] . ( 596 sec) [ -16276.8502] [Topology ] . ( 598 sec) [ -16276.8497] [Alpha ][ 0.377100] . ( 598 sec) [ -16276.8497] [Topology ] . ( 607 sec) [ -16276.8491] [Topology ] . ( 608 sec) [ -16276.8491] [Alpha ][ 0.377100] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16276.849102. . Printing the most likely tree in file 'proteic_M1487_52x981_2003.phy_phyml_tree.txt'... . Time used 0h11m18s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 659.99user 0.00system 11:19.73elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps