.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1503_23x479_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 356 patterns found. (out of a total of 479 sites) . 140 sites without polymorphism (29.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 19Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -9920.9916] [Alpha ][ 0.500960] . ( 3 sec) [ -9920.4868] [ 1746] [depth= 1] . ( 3 sec) [ -9918.9749] [ 1748] [depth= 1] . ( 4 sec) [ -9916.9721] [ 1749] [depth= 1] . ( 6 sec) [ -9911.0355] [ 1750] [depth= 1] . ( 11 sec) [ -9902.7965] [ 1750] [depth= 2] . ( 12 sec) [ -9896.0069] [ 1744] [depth= 1] . ( 13 sec) [ -9895.2402] [ 1747] [depth= 1] . ( 13 sec) [ -9893.0349] [ 1743] [depth= 1] . ( 14 sec) [ -9892.2817] [ 1747] [depth= 1] . ( 14 sec) [ -9892.2648] [ 1743] [depth= 1] . ( 14 sec) [ -9888.2612] [ 1743] [depth= 1] . ( 15 sec) [ -9887.7172] [ 1751] [depth= 1] . ( 16 sec) [ -9884.1766] [ 1743] [depth= 1] . ( 17 sec) [ -9880.9951] [ 1743] [depth= 1] . ( 19 sec) [ -9879.7464] [ 1743] [depth= 1] . ( 20 sec) [ -9856.8332] [Branch lengths ] . ( 20 sec) [ -9855.8301] [Alpha ][ 0.553326] . ( 34 sec) [ -9853.9110] [ 1743] [depth= 1] . ( 40 sec) [ -9851.7389] [Branch lengths ] . ( 41 sec) [ -9851.6339] [Alpha ][ 0.571283] . ( 60 sec) [ -9851.3159] [Branch lengths ] . ( 60 sec) [ -9851.3159] [Topology ] . ( 61 sec) [ -9851.2852] [Topology ] . ( 63 sec) [ -9851.2763] [Topology ] . ( 65 sec) [ -9851.2725] [Topology ] . ( 67 sec) [ -9851.2708] [Topology ] . ( 68 sec) [ -9851.2701] [Topology ] . ( 69 sec) [ -9851.2269] [Alpha ][ 0.583426] . ( 69 sec) [ -9851.2269] [Topology ] . ( 70 sec) [ -9851.2189] [Topology ] . ( 72 sec) [ -9851.2160] [Topology ] . ( 74 sec) [ -9851.2147] [Topology ] . ( 76 sec) [ -9851.2141] [Topology ] . ( 76 sec) [ -9851.2128] [Alpha ][ 0.585523] . ( 76 sec) [ -9851.2128] [Topology ] . ( 78 sec) [ -9851.2120] [Topology ] . ( 78 sec) [ -9851.2120] [Alpha ][ 0.586109] . Checking for NNIs, optimizing five branches... . ( 93 sec) [ -9851.2098] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9851.209848. . Printing the most likely tree in file 'proteic_M1503_23x479_2003.phy_phyml_tree.txt'... . Time used 0h1m50s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 98.56user 0.00system 1:49.75elapsed 89%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps