.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1504_37x547_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 429 patterns found. (out of a total of 547 sites) . 136 sites without polymorphism (24.86%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 38Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -12688.8590] [Alpha ][ 0.659988] . ( 12 sec) [ -12684.2203] [ 2077] [depth= 1] . ( 12 sec) [ -12676.3688] [ 2073] [depth= 1] . ( 13 sec) [ -12674.9374] [ 2075] [depth= 1] . ( 13 sec) [ -12673.8585] [ 2073] [depth= 1] . ( 14 sec) [ -12665.9111] [ 2074] [depth= 2] . ( 15 sec) [ -12660.8542] [ 2079] [depth= 1] . ( 15 sec) [ -12660.0933] [ 2079] [depth= 1] . ( 16 sec) [ -12659.7274] [ 2074] [depth= 1] . ( 21 sec) [ -12659.6120] [ 2075] [depth= 1] . ( 21 sec) [ -12656.1804] [ 2074] [depth= 1] . ( 23 sec) [ -12655.2707] [ 2079] [depth= 1] . ( 26 sec) [ -12651.6896] [ 2069] [depth= 2] . ( 27 sec) [ -12638.6803] [ 2072] [depth= 1] . ( 28 sec) [ -12636.7169] [ 2068] [depth= 1] . ( 29 sec) [ -12633.4255] [ 2074] [depth= 1] . ( 29 sec) [ -12627.7603] [ 2068] [depth= 1] . ( 30 sec) [ -12627.6648] [ 2069] [depth= 3] . ( 33 sec) [ -12604.8636] [Branch lengths ] . ( 34 sec) [ -12602.7370] [Alpha ][ 0.756529] . ( 45 sec) [ -12600.2376] [ 2076] [depth= 1] . ( 50 sec) [ -12599.6229] [ 2078] [depth= 1] . ( 62 sec) [ -12599.4021] [ 2075] [depth= 1] . ( 63 sec) [ -12599.3808] [ 2078] [depth= 1] . ( 65 sec) [ -12599.0854] [ 2078] [depth= 1] . ( 71 sec) [ -12599.0589] [ 2074] [depth= 1] . ( 74 sec) [ -12592.7926] [Branch lengths ] . ( 74 sec) [ -12592.7654] [Alpha ][ 0.768650] . ( 84 sec) [ -12591.2793] [ 2067] [depth= 1] . ( 99 sec) [ -12590.9233] [ 2069] [depth= 2] . ( 102 sec) [ -12590.8398] [ 2071] [depth= 1] . ( 106 sec) [ -12590.6237] [ 2072] [depth= 2] . ( 106 sec) [ -12590.2591] [ 2069] [depth= 1] . ( 109 sec) [ -12585.8948] [Branch lengths ] . ( 110 sec) [ -12585.8629] [Alpha ][ 0.781989] . ( 149 sec) [ -12585.5989] [Branch lengths ] . ( 149 sec) [ -12585.5989] [Topology ] . ( 152 sec) [ -12585.5703] [Topology ] . ( 156 sec) [ -12585.5588] [Topology ] . ( 160 sec) [ -12585.5520] [Topology ] . ( 164 sec) [ -12585.5478] [Topology ] . ( 167 sec) [ -12585.5452] [Topology ] . ( 171 sec) [ -12585.5436] [Topology ] . ( 172 sec) [ -12585.5381] [Alpha ][ 0.787518] . ( 172 sec) [ -12585.5381] [Topology ] . ( 176 sec) [ -12585.5364] [Topology ] . ( 179 sec) [ -12585.5353] [Topology ] . ( 183 sec) [ -12585.5346] [Topology ] . ( 183 sec) [ -12585.5346] [Alpha ][ 0.788305] . ( 184 sec) [ -12585.5346] [Topology ] . ( 187 sec) [ -12585.5342] [Topology ] . ( 188 sec) [ -12585.5342] [Alpha ][ 0.788305] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12585.534159. . Printing the most likely tree in file 'proteic_M1504_37x547_2003.phy_phyml_tree.txt'... . Time used 0h3m36s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 216.29user 0.00system 3:37.28elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps