..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1508_22x431_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 172 patterns found. (out of a total of 431 sites) 

. 298 sites without polymorphism (69.14%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 9Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [     -3189.9244] [Alpha              ][  0.500960]
. (    7 sec) [     -3187.2806] [  315] [depth=    1]
. (   12 sec) [     -3185.8706] [  319] [depth=    4]
. (   12 sec) [     -3184.0076] [  319] [depth=    1]
. (   12 sec) [     -3182.5111] [  319] [depth=    1]
. (   12 sec) [     -3181.7331] [  319] [depth=    1]
. (   15 sec) [     -3181.5180] [  319] [depth=    1]
. (   15 sec) [     -3181.2264] [  319] [depth=    1]
. (   16 sec) [     -3181.0679] [  319] [depth=    1]
. (   17 sec) [     -3180.6103] [  320] [depth=    2]
. (   17 sec) [     -3176.1281] [  320] [depth=    4]
. (   24 sec) [     -3173.0154] [  320] [depth=    1]
. (   25 sec) [     -3172.6462] [  320] [depth=    1]
. (   25 sec) [     -3172.3535] [  320] [depth=    1]
. (   25 sec) [     -3171.5527] [  320] [depth=    1]
. (   25 sec) [     -3170.6153] [  320] [depth=    1]
. (   42 sec) [     -3163.4617] [Branch lengths     ]
. (   43 sec) [     -3153.5686] [Alpha              ][  0.268252]
. (   68 sec) [     -3153.5475] [  320] [depth=    1]
. (   98 sec) [     -3153.0856] [Branch lengths     ]
. (   98 sec) [     -3153.0852] [Alpha              ][  0.269228]
. (   98 sec) [     -3153.0852] [Topology           ]
. (   99 sec) [     -3153.0791] [Topology           ]
. (  100 sec) [     -3153.0783] [Topology           ]
. (  100 sec) [     -3153.0783] [Alpha              ][  0.269517]
. (  100 sec) [     -3153.0783] [Topology           ]
. (  101 sec) [     -3153.0780] [Topology           ]
. (  101 sec) [     -3153.0780] [Alpha              ][  0.269517]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -3153.078044.

. Printing the most likely tree in file 'proteic_M1508_22x431_2003.phy_phyml_tree.txt'...


. Time used 0h1m48s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
99.88user 0.00system 1:47.82elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps