.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1812_34x176_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 173 patterns found. (out of a total of 176 sites) . 16 sites without polymorphism (9.09%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 14Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -5450.8068] [Alpha ][ 1.505579] . ( 8 sec) [ -5450.0189] [ 1012] [depth= 1] . ( 8 sec) [ -5448.9229] [ 1012] [depth= 1] . ( 9 sec) [ -5448.5154] [ 1012] [depth= 1] . ( 9 sec) [ -5448.4366] [ 1008] [depth= 1] . ( 11 sec) [ -5447.8104] [ 1010] [depth= 1] . ( 13 sec) [ -5442.4187] [ 1008] [depth= 1] . ( 18 sec) [ -5442.0670] [ 1009] [depth= 1] . ( 19 sec) [ -5441.3342] [ 1008] [depth= 1] . ( 28 sec) [ -5440.1143] [ 1008] [depth= 1] . ( 29 sec) [ -5438.2939] [ 1005] [depth= 1] . ( 31 sec) [ -5423.1735] [Branch lengths ] . ( 32 sec) [ -5423.0919] [Alpha ][ 1.584207] . ( 40 sec) [ -5422.7747] [ 1006] [depth= 1] . ( 60 sec) [ -5421.0139] [Branch lengths ] . ( 61 sec) [ -5420.9977] [Alpha ][ 1.619858] . ( 88 sec) [ -5420.8880] [Branch lengths ] . ( 88 sec) [ -5420.8880] [Topology ] . ( 90 sec) [ -5420.8765] [Topology ] . ( 91 sec) [ -5420.8733] [Topology ] . ( 93 sec) [ -5420.8719] [Topology ] . ( 94 sec) [ -5420.8713] [Topology ] . ( 95 sec) [ -5420.8709] [Alpha ][ 1.625216] . ( 95 sec) [ -5420.8709] [Topology ] . ( 96 sec) [ -5420.8706] [Topology ] . ( 96 sec) [ -5420.8706] [Alpha ][ 1.625216] . Checking for NNIs, optimizing five branches... . ( 107 sec) [ -5420.5862] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5420.586153. . Printing the most likely tree in file 'proteic_M1812_34x176_2004.phy_phyml_tree.txt'... . Time used 0h1m58s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 110.46user 0.00system 1:57.92elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps