.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1993_28x93_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 79 patterns found. (out of a total of 93 sites) . 26 sites without polymorphism (27.96%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 6Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -2041.7950] [Alpha ][ 0.666358] . ( 1 sec) [ -2040.6879] [ 341] [depth= 1] . ( 1 sec) [ -2038.7596] [ 342] [depth= 1] . ( 4 sec) [ -2038.5780] [ 341] [depth= 1] . ( 4 sec) [ -2038.5557] [ 341] [depth= 1] . ( 5 sec) [ -2038.1903] [ 342] [depth= 1] . ( 5 sec) [ -2037.8703] [ 342] [depth= 1] . ( 5 sec) [ -2030.3424] [ 340] [depth= 3] . ( 5 sec) [ -2026.9676] [ 340] [depth= 3] . ( 5 sec) [ -2026.2127] [ 340] [depth= 1] . ( 5 sec) [ -2024.4980] [ 341] [depth= 1] . ( 5 sec) [ -2024.1418] [ 340] [depth= 1] . ( 6 sec) [ -2023.8722] [ 341] [depth= 1] . ( 10 sec) [ -2023.6288] [ 342] [depth= 1] . ( 10 sec) [ -2022.5545] [ 342] [depth= 1] . ( 11 sec) [ -2021.9073] [ 343] [depth= 3] . ( 12 sec) [ -2021.0324] [ 342] [depth= 1] . ( 19 sec) [ -2018.7943] [ 343] [depth= 1] . ( 19 sec) [ -2014.7372] [ 343] [depth= 2] . ( 19 sec) [ -2013.5744] [ 343] [depth= 1] . ( 19 sec) [ -2013.5637] [ 343] [depth= 1] . ( 19 sec) [ -2013.5271] [ 343] [depth= 1] . ( 22 sec) [ -2008.6305] [Branch lengths ] . ( 22 sec) [ -2008.5365] [Alpha ][ 0.716368] . ( 27 sec) [ -2008.5249] [ 344] [depth= 1] . ( 28 sec) [ -2008.4460] [ 344] [depth= 1] . ( 38 sec) [ -2007.7061] [ 343] [depth= 1] . ( 48 sec) [ -2006.9724] [ 342] [depth= 1] . ( 52 sec) [ -2005.6557] [Branch lengths ] . ( 53 sec) [ -2005.6504] [Alpha ][ 0.729164] . ( 68 sec) [ -2005.6342] [ 343] [depth= 2] . ( 70 sec) [ -2005.5462] [ 342] [depth= 1] . ( 80 sec) [ -2005.1672] [Branch lengths ] . ( 80 sec) [ -2005.1667] [Alpha ][ 0.733039] . ( 80 sec) [ -2005.1667] [Topology ] . ( 81 sec) [ -2005.1496] [Topology ] . ( 82 sec) [ -2005.1443] [Topology ] . ( 82 sec) [ -2005.1417] [Topology ] . ( 83 sec) [ -2005.1404] [Topology ] . ( 84 sec) [ -2005.1397] [Topology ] . ( 84 sec) [ -2005.1396] [Alpha ][ 0.733952] . ( 84 sec) [ -2005.1396] [Topology ] . ( 84 sec) [ -2005.1393] [Topology ] . ( 84 sec) [ -2005.1393] [Alpha ][ 0.733952] . Checking for NNIs, optimizing five branches... . ( 89 sec) [ -2005.0786] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2005.078648. . Printing the most likely tree in file 'proteic_M1993_28x93_2004.phy_phyml_tree.txt'... . Time used 0h1m33s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 92.06user 0.00system 1:33.57elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps